| /dports/biology/bbmap/bbmap/current/jgi/ |
| H A D | SplitSam6Way.java | 132 if(r1plus!=null){r1plus.poisonAndWait();} in SplitSam6Way()
133 if(r1minus!=null){r1minus.poisonAndWait();} in SplitSam6Way()
134 if(r1unmapped!=null){r1unmapped.poisonAndWait();} in SplitSam6Way()
135 if(r2plus!=null){r2plus.poisonAndWait();} in SplitSam6Way()
136 if(r2minus!=null){r2minus.poisonAndWait();} in SplitSam6Way()
137 if(r2unmapped!=null){r2unmapped.poisonAndWait();} in SplitSam6Way()
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| H A D | SplitSam4Way.java | 100 if(plus!=null){plus.poisonAndWait();} in SplitSam4Way()
101 if(minus!=null){minus.poisonAndWait();} in SplitSam4Way()
102 if(chimeric!=null){chimeric.poisonAndWait();} in SplitSam4Way()
103 if(unmapped!=null){unmapped.poisonAndWait();} in SplitSam4Way()
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| H A D | SplitSamFile.java | 71 if(fStream!=null){fStream.poisonAndWait();} in main()
72 if(rStream!=null){rStream.poisonAndWait();} in main()
73 if(uStream!=null){uStream.poisonAndWait();} in main()
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| H A D | MergeSam.java | 153 if(bsw!=null){errorState|=bsw.poisonAndWait();} in process()
154 if(bswInvalid!=null){errorState|=bswInvalid.poisonAndWait();} in process()
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| H A D | SealRefInfo.java | 189 tsw.poisonAndWait(); in writeRefStats()
237 tsw.poisonAndWait(); in writeRefStats_BBSplitStyle()
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| H A D | CorrelateBarcodes.java | 315 tsw.poisonAndWait(); in process()
332 tsw.poisonAndWait(); in process()
349 tsw.poisonAndWait(); in process()
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| H A D | MakeContaminatedGenomes.java | 227 bsw.poisonAndWait(); in writeChimera()
237 bsw.poisonAndWait(); in writeChimera()
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| H A D | FungalRelease.java | 282 bswLegend.poisonAndWait(); in processInner()
316 bswAgp.poisonAndWait(); in processInner()
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| H A D | KmerCountMulti.java | 315 errorState|=tsw.poisonAndWait();
351 errorState|=tsw.poisonAndWait();
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| /dports/biology/bbmap/bbmap/current/stream/ |
| H A D | BufferedMultiCros.java | 111 if(threaded){poisonAndWait();} in close()
180 public final void poisonAndWait(){ in poisonAndWait() method in BufferedMultiCros
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| /dports/biology/bbmap/bbmap/current/sketch/ |
| H A D | AnalyzeSketchResults.java | 214 if(bsw!=null){errorState|=bsw.poisonAndWait();} in process()
223 if(bswAcc!=null){errorState|=bswAcc.poisonAndWait();} in process()
224 if(bswBad!=null){errorState|=bswBad.poisonAndWait();} in process()
231 if(bswMap!=null){errorState|=bswMap.poisonAndWait();} in process()
288 if(bsw!=null){errorState|=bsw.poisonAndWait();} in runShrinkOnly()
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| H A D | SubSketch.java | 216 bsw.poisonAndWait(); in process()
230 bsw.poisonAndWait(); in process()
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| H A D | CompareSketch.java | 391 if(tsw!=null){errorState|=tsw.poisonAndWait();}
422 bsw.poisonAndWait();
443 bsw.poisonAndWait();
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| H A D | SendSketch.java | 417 bsw.poisonAndWait(); in processRemote_old()
563 bsw.poisonAndWait(); in processRemote()
641 tsw.poisonAndWait(); in processLocal()
681 tsw.poisonAndWait(); in processRefMode()
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| /dports/biology/bbmap/bbmap/current/driver/ |
| H A D | ProcessWebcheck.java | 200 errorState|=bsw.poisonAndWait(); in process()
202 if(bswInvalid!=null){errorState|=bswInvalid.poisonAndWait();} in process()
203 if(bswFail!=null){errorState|=bswFail.poisonAndWait();} in process()
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| H A D | FixChr.java | 27 tsw.poisonAndWait(); in main()
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| H A D | MergeCoverageOTU.java | 63 tsw.poisonAndWait(); in main()
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| H A D | SummarizeCoverage.java | 104 tsw.poisonAndWait(); in process()
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| /dports/biology/bbmap/bbmap/current/tax/ |
| H A D | ExplodeTree.java | 198 errorState|=tsw.poisonAndWait(); in process()
263 if(bsw!=null){errorState=bsw.poisonAndWait()|errorState; bsw=null;} in processInner()
289 errorState=bsw.poisonAndWait()|errorState; bsw=null; in processInner()
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| H A D | FindAncestor.java | 204 if(bsw!=null){errorState|=bsw.poisonAndWait();} in process()
205 if(bswInvalid!=null){errorState|=bswInvalid.poisonAndWait();} in process()
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| /dports/biology/bbmap/bbmap/current/template/ |
| H A D | A_SampleByteFile.java | 179 if(bsw!=null){errorState|=bsw.poisonAndWait();} in process()
180 if(bswInvalid!=null){errorState|=bswInvalid.poisonAndWait();} in process()
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| H A D | A_SampleBasic2.java | 143 if(bsw!=null){errorState|=bsw.poisonAndWait();} in process()
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| /dports/biology/bbmap/bbmap/current/gff/ |
| H A D | GbffFile.java | 26 bsw.poisonAndWait(); in main()
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| /dports/biology/bbmap/bbmap/current/fun/ |
| H A D | MakeAdjacencyList.java | 82 tsw.poisonAndWait(); in writeMatrix()
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| /dports/biology/bbmap/bbmap/current/align2/ |
| H A D | GradeSamFile.java | 128 if(tswLoose!=null){tswLoose.poisonAndWait();} in main()
129 if(tswStrict!=null){tswStrict.poisonAndWait();} in main()
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