| /dports/biology/hisat2/hisat2-2.2.1/ |
| H A D | hisat2.cpp | 423 polstr.clear(); in resetOptions()
1266 case 'R': { polstr += ";ROUNDS="; polstr += arg; break; } in parseOption()
1267 case 'D': { polstr += ";DPS="; polstr += arg; break; } in parseOption()
1463 polstr += ";"; polstr += arg; in parseOption()
1467 case 'N': { polstr += ";SEED="; polstr += arg; break; } in parseOption()
1478 polstr += ";SEEDLEN="; polstr += arg; break; in parseOption()
1503 polstr += ";"; in parseOption()
1548 case ARG_SCORE_MA: polstr += ";MA="; polstr += arg; break; in parseOption()
1826 polstr = applyPreset(defaultPreset, *presets.get()) + polstr; in parseOptions()
1838 while(!polstr.empty() && polstr[0] == ';') { in parseOptions()
[all …]
|
| H A D | hisat_bp.cpp | 379 polstr.clear(); in resetOptions()
1111 case 'R': { polstr += ";ROUNDS="; polstr += arg; break; } in parseOption()
1112 case 'D': { polstr += ";DPS="; polstr += arg; break; } in parseOption()
1301 polstr += ";"; polstr += arg; in parseOption()
1305 case 'N': { polstr += ";SEED="; polstr += arg; break; } in parseOption()
1316 polstr += ";SEEDLEN="; polstr += arg; break; in parseOption()
1341 polstr += ";"; in parseOption()
1521 polstr = applyPreset(defaultPreset, *presets.get()) + polstr; in parseOptions()
1533 while(!polstr.empty() && polstr[0] == ';') { in parseOptions()
1534 polstr = polstr.substr(1); in parseOptions()
[all …]
|
| /dports/databases/postgresql96-server/postgresql-9.6.24/src/backend/utils/adt/ |
| H A D | tsquery.c | 45 List *polstr; member
347 state->polstr = lcons(tmp, state->polstr); in pushOperator()
374 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
427 state->polstr = lcons(tmp, state->polstr); in pushStop()
623 state.polstr = NIL; in parse_tsquery()
639 if (list_length(state.polstr) == 0) in parse_tsquery()
650 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
654 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
659 query->size = list_length(state.polstr); in parse_tsquery()
664 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql96-pltcl/postgresql-9.6.24/src/backend/utils/adt/ |
| H A D | tsquery.c | 45 List *polstr; member
347 state->polstr = lcons(tmp, state->polstr); in pushOperator()
374 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
427 state->polstr = lcons(tmp, state->polstr); in pushStop()
623 state.polstr = NIL; in parse_tsquery()
639 if (list_length(state.polstr) == 0) in parse_tsquery()
650 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
654 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
659 query->size = list_length(state.polstr); in parse_tsquery()
664 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql96-plpython/postgresql-9.6.24/src/backend/utils/adt/ |
| H A D | tsquery.c | 45 List *polstr; member
347 state->polstr = lcons(tmp, state->polstr); in pushOperator()
374 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
427 state->polstr = lcons(tmp, state->polstr); in pushStop()
623 state.polstr = NIL; in parse_tsquery()
639 if (list_length(state.polstr) == 0) in parse_tsquery()
650 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
654 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
659 query->size = list_length(state.polstr); in parse_tsquery()
664 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql10-plperl/postgresql-10.19/src/backend/utils/adt/ |
| H A D | tsquery.c | 45 List *polstr; member
347 state->polstr = lcons(tmp, state->polstr); in pushOperator()
374 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
427 state->polstr = lcons(tmp, state->polstr); in pushStop()
623 state.polstr = NIL; in parse_tsquery()
639 if (list_length(state.polstr) == 0) in parse_tsquery()
650 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
654 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
659 query->size = list_length(state.polstr); in parse_tsquery()
664 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql10-server/postgresql-10.19/src/backend/utils/adt/ |
| H A D | tsquery.c | 45 List *polstr; member
347 state->polstr = lcons(tmp, state->polstr); in pushOperator()
374 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
427 state->polstr = lcons(tmp, state->polstr); in pushStop()
623 state.polstr = NIL; in parse_tsquery()
639 if (list_length(state.polstr) == 0) in parse_tsquery()
650 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
654 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
659 query->size = list_length(state.polstr); in parse_tsquery()
664 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql10-pltcl/postgresql-10.19/src/backend/utils/adt/ |
| H A D | tsquery.c | 45 List *polstr; member
347 state->polstr = lcons(tmp, state->polstr); in pushOperator()
374 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
427 state->polstr = lcons(tmp, state->polstr); in pushStop()
623 state.polstr = NIL; in parse_tsquery()
639 if (list_length(state.polstr) == 0) in parse_tsquery()
650 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
654 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
659 query->size = list_length(state.polstr); in parse_tsquery()
664 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql10-client/postgresql-10.19/src/backend/utils/adt/ |
| H A D | tsquery.c | 45 List *polstr; member
347 state->polstr = lcons(tmp, state->polstr); in pushOperator()
374 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
427 state->polstr = lcons(tmp, state->polstr); in pushStop()
623 state.polstr = NIL; in parse_tsquery()
639 if (list_length(state.polstr) == 0) in parse_tsquery()
650 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
654 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
659 query->size = list_length(state.polstr); in parse_tsquery()
664 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql10-contrib/postgresql-10.19/src/backend/utils/adt/ |
| H A D | tsquery.c | 45 List *polstr; member
347 state->polstr = lcons(tmp, state->polstr); in pushOperator()
374 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
427 state->polstr = lcons(tmp, state->polstr); in pushStop()
623 state.polstr = NIL; in parse_tsquery()
639 if (list_length(state.polstr) == 0) in parse_tsquery()
650 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
654 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
659 query->size = list_length(state.polstr); in parse_tsquery()
664 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql10-docs/postgresql-10.19/src/backend/utils/adt/ |
| H A D | tsquery.c | 45 List *polstr; member
347 state->polstr = lcons(tmp, state->polstr); in pushOperator()
374 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
427 state->polstr = lcons(tmp, state->polstr); in pushStop()
623 state.polstr = NIL; in parse_tsquery()
639 if (list_length(state.polstr) == 0) in parse_tsquery()
650 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
654 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
659 query->size = list_length(state.polstr); in parse_tsquery()
664 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql10-plpython/postgresql-10.19/src/backend/utils/adt/ |
| H A D | tsquery.c | 45 List *polstr; member
347 state->polstr = lcons(tmp, state->polstr); in pushOperator()
374 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
427 state->polstr = lcons(tmp, state->polstr); in pushStop()
623 state.polstr = NIL; in parse_tsquery()
639 if (list_length(state.polstr) == 0) in parse_tsquery()
650 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
654 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
659 query->size = list_length(state.polstr); in parse_tsquery()
664 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql96-client/postgresql-9.6.24/src/backend/utils/adt/ |
| H A D | tsquery.c | 45 List *polstr; member
347 state->polstr = lcons(tmp, state->polstr); in pushOperator()
374 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
427 state->polstr = lcons(tmp, state->polstr); in pushStop()
623 state.polstr = NIL; in parse_tsquery()
639 if (list_length(state.polstr) == 0) in parse_tsquery()
650 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
654 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
659 query->size = list_length(state.polstr); in parse_tsquery()
664 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql96-docs/postgresql-9.6.24/src/backend/utils/adt/ |
| H A D | tsquery.c | 45 List *polstr; member
347 state->polstr = lcons(tmp, state->polstr); in pushOperator()
374 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
427 state->polstr = lcons(tmp, state->polstr); in pushStop()
623 state.polstr = NIL; in parse_tsquery()
639 if (list_length(state.polstr) == 0) in parse_tsquery()
650 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
654 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
659 query->size = list_length(state.polstr); in parse_tsquery()
664 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql96-contrib/postgresql-9.6.24/src/backend/utils/adt/ |
| H A D | tsquery.c | 45 List *polstr; member
347 state->polstr = lcons(tmp, state->polstr); in pushOperator()
374 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
427 state->polstr = lcons(tmp, state->polstr); in pushStop()
623 state.polstr = NIL; in parse_tsquery()
639 if (list_length(state.polstr) == 0) in parse_tsquery()
650 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
654 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
659 query->size = list_length(state.polstr); in parse_tsquery()
664 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql96-plperl/postgresql-9.6.24/src/backend/utils/adt/ |
| H A D | tsquery.c | 45 List *polstr; member
347 state->polstr = lcons(tmp, state->polstr); in pushOperator()
374 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
427 state->polstr = lcons(tmp, state->polstr); in pushStop()
623 state.polstr = NIL; in parse_tsquery()
639 if (list_length(state.polstr) == 0) in parse_tsquery()
650 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
654 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
659 query->size = list_length(state.polstr); in parse_tsquery()
664 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql14-pltcl/postgresql-14.1/src/backend/utils/adt/ |
| H A D | tsquery.c | 83 List *polstr; member
523 state->polstr = lcons(tmp, state->polstr); in pushOperator()
550 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
603 state->polstr = lcons(tmp, state->polstr); in pushStop()
816 state.polstr = NIL; in parse_tsquery()
832 if (list_length(state.polstr) == 0) in parse_tsquery()
843 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
847 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
852 query->size = list_length(state.polstr); in parse_tsquery()
857 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql14-client/postgresql-14.1/src/backend/utils/adt/ |
| H A D | tsquery.c | 83 List *polstr; member
523 state->polstr = lcons(tmp, state->polstr); in pushOperator()
550 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
603 state->polstr = lcons(tmp, state->polstr); in pushStop()
816 state.polstr = NIL; in parse_tsquery()
832 if (list_length(state.polstr) == 0) in parse_tsquery()
843 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
847 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
852 query->size = list_length(state.polstr); in parse_tsquery()
857 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql14-contrib/postgresql-14.1/src/backend/utils/adt/ |
| H A D | tsquery.c | 83 List *polstr; member
523 state->polstr = lcons(tmp, state->polstr); in pushOperator()
550 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
603 state->polstr = lcons(tmp, state->polstr); in pushStop()
816 state.polstr = NIL; in parse_tsquery()
832 if (list_length(state.polstr) == 0) in parse_tsquery()
843 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
847 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
852 query->size = list_length(state.polstr); in parse_tsquery()
857 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql14-plpython/postgresql-14.1/src/backend/utils/adt/ |
| H A D | tsquery.c | 83 List *polstr; member
523 state->polstr = lcons(tmp, state->polstr); in pushOperator()
550 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
603 state->polstr = lcons(tmp, state->polstr); in pushStop()
816 state.polstr = NIL; in parse_tsquery()
832 if (list_length(state.polstr) == 0) in parse_tsquery()
843 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
847 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
852 query->size = list_length(state.polstr); in parse_tsquery()
857 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql14-server/postgresql-14.1/src/backend/utils/adt/ |
| H A D | tsquery.c | 83 List *polstr; member
523 state->polstr = lcons(tmp, state->polstr); in pushOperator()
550 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
603 state->polstr = lcons(tmp, state->polstr); in pushStop()
816 state.polstr = NIL; in parse_tsquery()
832 if (list_length(state.polstr) == 0) in parse_tsquery()
843 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
847 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
852 query->size = list_length(state.polstr); in parse_tsquery()
857 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql14-plperl/postgresql-14.1/src/backend/utils/adt/ |
| H A D | tsquery.c | 83 List *polstr; member
523 state->polstr = lcons(tmp, state->polstr); in pushOperator()
550 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
603 state->polstr = lcons(tmp, state->polstr); in pushStop()
816 state.polstr = NIL; in parse_tsquery()
832 if (list_length(state.polstr) == 0) in parse_tsquery()
843 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
847 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
852 query->size = list_length(state.polstr); in parse_tsquery()
857 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/databases/postgresql14-docs/postgresql-14.1/src/backend/utils/adt/ |
| H A D | tsquery.c | 83 List *polstr; member
523 state->polstr = lcons(tmp, state->polstr); in pushOperator()
550 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
603 state->polstr = lcons(tmp, state->polstr); in pushStop()
816 state.polstr = NIL; in parse_tsquery()
832 if (list_length(state.polstr) == 0) in parse_tsquery()
843 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
847 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
852 query->size = list_length(state.polstr); in parse_tsquery()
857 foreach(cell, state.polstr) in parse_tsquery()
|
| /dports/biology/bowtie2/bowtie2-2.4.4/ |
| H A D | bt2_search.cpp | 392 polstr.clear(); in resetOptions()
1215 case 'R': { polstr += ";ROUNDS="; polstr += arg; break; } in parseOption()
1216 case 'D': { polstr += ";DPS="; polstr += arg; break; } in parseOption()
1408 polstr += ";"; polstr += arg; in parseOption()
1419 polstr += arg; in parseOption()
1429 polstr += arg; in parseOption()
1455 polstr += ";"; in parseOption()
1623 polstr = applyPreset(defaultPreset, *presets.get()) + polstr; in parseOptions()
1638 while(!polstr.empty() && polstr[0] == ';') { in parseOptions()
1639 polstr = polstr.substr(1); in parseOptions()
[all …]
|
| /dports/databases/postgresql11-client/postgresql-11.14/src/backend/utils/adt/ |
| H A D | tsquery.c | 84 List *polstr; member
557 state->polstr = lcons(tmp, state->polstr); in pushOperator()
584 state->polstr = lcons(tmp, state->polstr); in pushValue_internal()
637 state->polstr = lcons(tmp, state->polstr); in pushStop()
851 state.polstr = NIL; in parse_tsquery()
867 if (list_length(state.polstr) == 0) in parse_tsquery()
878 if (TSQUERY_TOO_BIG(list_length(state.polstr), state.sumlen)) in parse_tsquery()
882 commonlen = COMPUTESIZE(list_length(state.polstr), state.sumlen); in parse_tsquery()
887 query->size = list_length(state.polstr); in parse_tsquery()
892 foreach(cell, state.polstr) in parse_tsquery()
|