Searched refs:polymerLength (Results 1 – 1 of 1) sorted by relevance
| /dports/biology/bbmap/bbmap/current/jgi/ |
| H A D | BBDuk.java | 450 polymerLength=Integer.parseInt(b); in BBDuk()
451 assert(polymerLength>=1); in BBDuk()
1259 …ounts: \t"+padRight(pTracker.getCountCumulative(polymerChar1, polymerLength)+" "+Character… in process2()
1260 …padRight(pTracker.getCountCumulative(polymerChar2, polymerLength)+" "+Character.toString((char)pol… in process2()
1261 ….ROOT, "%.4f", pTracker.calcRatioCumulative(polymerChar1, polymerChar2, polymerLength))+" ratio)"); in process2()
1348 …+Character.toString((char)polymerChar1), pTracker.getCountCumulative(polymerChar1, polymerLength)); in toJson()
1349 …+Character.toString((char)polymerChar2), pTracker.getCountCumulative(polymerChar2, polymerLength)); in toJson()
1350 …sonStats.add("polyRatio", pTracker.calcRatioCumulative(polymerChar1, polymerChar2, polymerLength)); in toJson()
1708 return pTracker.calcRatioCumulative(polymerChar1, polymerChar2, polymerLength); in getPolymerRatio()
4660 int polymerLength=20; local
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