/dports/biology/recombine/recombine1.41/ |
H A D | getmsatdata.c | 24 (*ms)->popnames = (char **)calloc(numpop,sizeof(char *)); in setupmsatdata() 25 (*ms)->popnames[0] = (char *)calloc(numpop*LINESIZE,sizeof(char)); in setupmsatdata() 27 (*ms)->popnames[i] = (*ms)->popnames[0] + i*LINESIZE; in setupmsatdata() 96 free(ms->popnames[0]); in freemsatdata() 97 free(ms->popnames); in freemsatdata()
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H A D | getdata.c | 759 strcpy(data->msptr->popnames[pop],poptitle); in setpopstuff() 764 strcpy(data->dnaptr->popnames[pop],poptitle); in setpopstuff() 785 (*dna)->popnames = (char **)calloc(numpop,sizeof(char *)); in setupdnadata() 786 (*dna)->popnames[0] = (char *)calloc(numpop*LINESIZE,sizeof(char)); in setupdnadata() 788 (*dna)->popnames[i] = (*dna)->popnames[0] + i*LINESIZE; in setupdnadata() 881 free(dna->popnames[0]); in freednadata() 882 free(dna->popnames); in freednadata()
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H A D | recombine.h | 367 char **popnames; /* population names, if any */ member 396 char **popnames; /* population names, if any */ member
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/dports/biology/lamarc/lamarc-2.1.8/src/conversion/ |
H A D | ConverterUI.cpp | 505 set<string> popnames; in GetPopulationNames() local 508 popnames.insert(unit->population); in GetPopulationNames() 510 return popnames; in GetPopulationNames() 805 set<string> popnames = GetPopulationNames(); in GetRegionalByPopMap() local 812 for(popname = popnames.begin(); popname != popnames.end(); ++popname) in GetRegionalByPopMap()
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H A D | HapConverter.cpp | 282 vector<string> popnames(individuals.size()); in ReplaceIndividualsWith() local 288 if (m_region.FailToAdd(individuals[whichind],popnames[whichind])) in ReplaceIndividualsWith() 300 m_region.AddIndividual(individuals[whichind],popnames[whichind]); in ReplaceIndividualsWith()
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/dports/biology/migrate/migrate-3.6.11/src/ |
H A D | data.c | 201 myfree(data->popnames[0]); in destroy_data() 204 myfree(data->popnames); in destroy_data() 337 fprintf (stdout, "Reading (%li) %s ...\n", pop, data->popnames[pop]); in get_new_data() 549 (*data)->popnames[pop] = (*data)->popnames[0] + pop * STRSIZE; in init_data_structure1() 1265 sprintf(data->popnames[pop],"%-*s", (int) minlength, input); in read_popheader() 1288 translate (data->popnames[pop], ' ', '_'); in read_popheader() 1289 translate (data->popnames[pop], '\t', '_'); in read_popheader() 1290 unpad(data->popnames[pop],"_"); in read_popheader() 1998 fprintf(file, "%-10.10s ", data->popnames[pop]); in print_random_subset() 2112 length = strlen(data->popnames[pop]); in print_data_summary() [all …]
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H A D | histogram.c | 104 data->popnames = (char **) mymalloc (sizeof (char *) * world->numpop); in read_from_bayesmdim_minimal_info() 107 data->popnames[pop] = (char *) mycalloc (1, sizeof (char) * LINESIZE); in read_from_bayesmdim_minimal_info() 113 sscanf (input+3, "%s", data->popnames[pop]); in read_from_bayesmdim_minimal_info() 114 printf("%i> population = %s\n",myID, data->popnames[pop]); in read_from_bayesmdim_minimal_info()
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H A D | world.c | 113 char **popnames, char plotvar[], long migrmodel); 1114 world->plotmax, data->popnames, in plot_surface() 1131 world->plotmax, data->popnames, in plot_surface() 1151 char **popnames, char plotvar[], long migrmodel) in plot_surface2() argument 1172 if (popnames == NULL) in plot_surface2() 1175 FPRINTF (outfile, "Population %li: %s\n", pop + 1, popnames[pop]); in plot_surface2() 3875 sprintf (popstring, "%2li: %s", pop + 1, data->popnames[options->newpops[pop]-1]); in print_popstring() 3999 sprintf (popstring, "%2li: %s", pop + 1, data->popnames[pop]); in print_result_fst()
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H A D | pretty.c | 3003 …f_printf (left_margin, *page_height, 'L', "%3li %-15.15s",options->newpops[i], data->popnames[i]); in pdf_print_connection_table() 3170 …f_printf (left_margin, *page_height, 'L', "%3li %-15.15s",options->newpops[i], data->popnames[i]); in pdf_print_distance_table() 3912 … pdf_printf(left_margin, page_height,'L', "%li %s", options->newpops[pop], data->popnames[pop]); in pdf_print_data_summary() 3922 … pdf_printf(left_margin, page_height, 'L', "%li %s",options->newpops[pop], data->popnames[pop]); in pdf_print_data_summary() 4169 pdf_printf_next(left_margin, page_height,"\n%-s", data->popnames[pop]); in pdf_print_dataheader() 4530 pdf_printf(lx[0],*ly, 'L', "%2li:%10.10s",pop+1, data->popnames[options->newpops[pop]-1]); in pdf_print_popstring() 4816 …f_printf (left_margin, *page_height, 'L', "%3li %-15.15s",options->newpops[i], data->popnames[i]); in pdf_print_correlation_table() 6072 sprintf(elements[linenumber][1], "%-10.10s ", data->popnames[pop]); in pdf_print_random_subset()
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H A D | main.c | 1416 data->popnames = (char **) mymalloc (sizeof (char *) * world->numpop); in analyze_olddata() 1425 data->popnames[pop] = in analyze_olddata() 1427 MYSNPRINTF (data->popnames[pop], LINESIZE, "Pop_%li ", pop + 1); in analyze_olddata()
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H A D | migration.h | 281 char **popnames; //!< array of the population names member
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H A D | migrate_mpi.c | 1548 bufsize = sprintf (buffer, "%s\n", data->popnames[pop]);//set to start in pack_databuffer() 1825 sscanf (input, "%s", data->popnames[pop]); in unpack_databuffer()
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H A D | options.c | 6301 fprintf (file, "%10.10s ", data->popnames[i]); in print_arbitrary_migration_table() 6327 fprintf (file, "%-10.10s ", data->popnames[i]); in print_distance_table()
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H A D | bayes.c | 3383 bufsize += sprintf(buf+bufsize,"#$ %s\n",data->popnames[pop]); in print_bayes_mdimfileheader()
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/dports/biology/lamarc/lamarc-2.1.8/src/datalike/ |
H A D | datapack.cpp | 64 set<string> popnames; in GetNumTipPopulations() local 67 (*rit)->AddUniqueNamesTo(popnames); in GetNumTipPopulations() 69 long ntippops(popnames.size()); in GetNumTipPopulations()
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H A D | region.cpp | 620 void Region::AddUniqueNamesTo(set<string>& popnames) const in AddUniqueNamesTo() 625 locit->AddUniqueNamesTo(popnames); in AddUniqueNamesTo() 1224 StringVec1d popnames(registry.GetDataPack().GetAllPartitionNames(migforce)); in MakeVectorOfPopulationXML() local 1227 npops = popnames.size(); in MakeVectorOfPopulationXML() 1234 pops.push_back(PopulationXML(*this,popnames[pindex])); in MakeVectorOfPopulationXML()
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H A D | region.h | 159 void AddUniqueNamesTo(std::set<string>& popnames) const;
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H A D | locus.h | 173 void AddUniqueNamesTo(std::set<string>& popnames) const;
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H A D | locus.cpp | 487 void Locus::AddUniqueNamesTo(set<string>& popnames) const in AddUniqueNamesTo() 491 popnames.insert(tip->m_popname); // only new names added because popnames is a std::set in AddUniqueNamesTo()
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/dports/science/nest/nest-simulator-3.1/extras/ConnPlotter/ |
H A D | ConnPlotter.py | 1422 popnames = sorted(list(set([p[1] for p in self._pops])), 1430 for pname in popnames:
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