Searched refs:preallocFraction (Results 1 – 6 of 6) sorted by relevance
| /dports/biology/bbmap/bbmap/current/ukmer/ |
| H A D | KmerTableSetU.java | 181 preallocFraction=Tools.max(0, Double.parseDouble(b)); in KmerTableSetU()
182 prealloc_=(preallocFraction>0); in KmerTableSetU()
295 …estimatedKmerCapacity=(long)((tableMemory*1.0/bytesPerKmer)*((prealloc ? preallocFraction : 0.81))… in KmerTableSetU()
306 final double mem2=(prealloc ? preallocFraction : 1)*tableMemory; in KmerTableSetU()
356 …ize+", prefilter="+(prefilter ? "t" : "f")+", prealloc="+(prealloc ? (""+preallocFraction) : "f")); in KmerTableSetU()
382 …(prealloc ? preallocFraction : 1.0), -1, (prefilter ? prepasses : 0), prefilterFraction, filterMem… in allocateTables()
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| /dports/biology/bbmap/bbmap/current/kmer/ |
| H A D | KmerTableSet.java | 178 preallocFraction=Tools.max(0, Double.parseDouble(b)); in KmerTableSet()
179 prealloc_=(preallocFraction>0); in KmerTableSet()
291 …estimatedKmerCapacity=(long)((tableMemory*1.0/bytesPerKmer)*((prealloc ? preallocFraction : 0.81))… in KmerTableSet()
305 final double mem2=(prealloc ? preallocFraction : 1)*tableMemory; in KmerTableSet()
358 …ize+", prefilter="+(prefilter ? "t" : "f")+", prealloc="+(prealloc ? (""+preallocFraction) : "f")); in KmerTableSet()
384 …(prealloc ? preallocFraction : 1.0), -1, (prefilter ? prepasses : 0), prefilterFraction, filterMem… in allocateTables()
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| H A D | AbstractKmerTableSet.java | 432 public double preallocFraction=1.0; field in AbstractKmerTableSet
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| /dports/biology/bbmap/bbmap/current/jgi/ |
| H A D | Seal.java | 259 preallocFraction=Tools.max(0, Double.parseDouble(b)); in Seal()
260 prealloc_=(preallocFraction>0); in Seal()
507 final double mem2=(prealloc_ ? preallocFraction : 1)*tableMemory; in Seal()
608 …ScheduleMaker scheduleMaker=new ScheduleMaker(WAYS, 14, prealloc_, (prealloc_ ? preallocFraction :… in Seal()
2809 private double preallocFraction=0.5; local
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| H A D | BBDuk2.java | 366 preallocFraction=Tools.max(0, Double.parseDouble(b)); in BBDuk2()
367 prealloc_=(preallocFraction>0); in BBDuk2()
604 final double mem2=(prealloc_ ? preallocFraction : 1)*tableMemory; in BBDuk2()
779 …ScheduleMaker scheduleMaker=new ScheduleMaker(WAYS, 12, prealloc_, (prealloc_ ? preallocFraction :… in BBDuk2()
3322 private double preallocFraction=1.0; field in BBDuk2
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| H A D | BBDuk.java | 385 preallocFraction=Tools.max(0, Double.parseDouble(b)); in BBDuk()
386 prealloc_=(preallocFraction>0); in BBDuk()
727 final double mem2=(prealloc_ ? preallocFraction : 1)*tableMemory; in BBDuk()
964 …ScheduleMaker scheduleMaker=new ScheduleMaker(WAYS, 12, prealloc_, (prealloc_ ? preallocFraction :… in BBDuk()
4439 private double preallocFraction=1.0; local
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