Searched refs:prefilter_evalue_thresh (Results 1 – 10 of 10) sorted by relevance
/dports/biology/hhsuite/hh-suite-3.3.0/src/ |
H A D | hhprefilter.h | 82 …t int prefilter_score_offset, const int prefilter_bit_factor, const double prefilter_evalue_thresh,
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H A D | hhdecl.cpp | 124 prefilter_evalue_thresh = 1000; in Parameters()
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H A D | hhhitlist.h | 83 … const float alphaa, const float alphab, const float alphac, const double prefilter_evalue_thresh);
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H A D | hhdatabase.h | 50 const double prefilter_evalue_thresh,
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H A D | hhdecl.h | 296 double prefilter_evalue_thresh; variable
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H A D | hhprefilter.cpp | 433 const int prefilter_bit_factor, const double prefilter_evalue_thresh, in prefilter_db() argument 548 && (*it2).first > prefilter_evalue_thresh) { in prefilter_db()
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H A D | hhdatabase.cpp | 172 const double prefilter_evalue_thresh, in prefilter_db() argument 185 prefilter_bit_factor, prefilter_evalue_thresh, in prefilter_db()
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H A D | hhblits.cpp | 264 …-value threshold of Smith-Waterman prefilter score (default=%.1f)\n", par.prefilter_evalue_thresh); in help() 722 par.prefilter_evalue_thresh = atof(argv[++i]); in ProcessArguments() 904 …lateHHblitsEvalues(q, par.dbsize, par.alphaa, par.alphab, par.alphac, par.prefilter_evalue_thresh); in add_hits_to_hitlist() 967 par.alphac, par.prefilter_evalue_thresh); in RescoreWithViterbiKeepAlignment() 1170 par.prefilter_evalue_thresh, in run() 1563 par.prefilter_evalue_thresh, in run()
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H A D | hhhitlist.cpp | 464 const double prefilter_evalue_thresh) { in CalculateHHblitsEvalues() argument 467 double log_Pcut = log(prefilter_evalue_thresh / dbsize); in CalculateHHblitsEvalues()
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H A D | hhviterbirunner.cpp | 226 float log_Pcut = log(par.prefilter_evalue_thresh / par.dbsize); in calculateEarlyStop()
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