Home
last modified time | relevance | path

Searched refs:prefilter_evalue_thresh (Results 1 – 10 of 10) sorted by relevance

/dports/biology/hhsuite/hh-suite-3.3.0/src/
H A Dhhprefilter.h82 …t int prefilter_score_offset, const int prefilter_bit_factor, const double prefilter_evalue_thresh,
H A Dhhdecl.cpp124 prefilter_evalue_thresh = 1000; in Parameters()
H A Dhhhitlist.h83 … const float alphaa, const float alphab, const float alphac, const double prefilter_evalue_thresh);
H A Dhhdatabase.h50 const double prefilter_evalue_thresh,
H A Dhhdecl.h296 double prefilter_evalue_thresh; variable
H A Dhhprefilter.cpp433 const int prefilter_bit_factor, const double prefilter_evalue_thresh, in prefilter_db() argument
548 && (*it2).first > prefilter_evalue_thresh) { in prefilter_db()
H A Dhhdatabase.cpp172 const double prefilter_evalue_thresh, in prefilter_db() argument
185 prefilter_bit_factor, prefilter_evalue_thresh, in prefilter_db()
H A Dhhblits.cpp264 …-value threshold of Smith-Waterman prefilter score (default=%.1f)\n", par.prefilter_evalue_thresh); in help()
722 par.prefilter_evalue_thresh = atof(argv[++i]); in ProcessArguments()
904 …lateHHblitsEvalues(q, par.dbsize, par.alphaa, par.alphab, par.alphac, par.prefilter_evalue_thresh); in add_hits_to_hitlist()
967 par.alphac, par.prefilter_evalue_thresh); in RescoreWithViterbiKeepAlignment()
1170 par.prefilter_evalue_thresh, in run()
1563 par.prefilter_evalue_thresh, in run()
H A Dhhhitlist.cpp464 const double prefilter_evalue_thresh) { in CalculateHHblitsEvalues() argument
467 double log_Pcut = log(prefilter_evalue_thresh / dbsize); in CalculateHHblitsEvalues()
H A Dhhviterbirunner.cpp226 float log_Pcut = log(par.prefilter_evalue_thresh / par.dbsize); in calculateEarlyStop()