Searched refs:printSiteStateFreq (Results 1 – 3 of 3) sorted by relevance
73 void printSiteStateFreq(const char*filename, PhyloTree *tree, double *state_freqs = NULL);80 void printSiteStateFreq(const char* filename, Alignment *aln);
371 void printSiteStateFreq(const char*filename, PhyloTree *tree, double *state_freqs) { in printSiteStateFreq() function407 void printSiteStateFreq(const char* filename, Alignment *aln) { in printSiteStateFreq() function
1919 printSiteStateFreq(site_freq_file.c_str(), &iqtree); in printMiscInfo()3171 …printSiteStateFreq((((string)params.out_prefix)+"."+convertIntToString(sample)+".bootsitefreq").c_… in runStandardBootstrap()3422 printSiteStateFreq(((string)params.out_prefix+".sitefreq").c_str(), tree, ptn_state_freq); in computeSiteFrequencyModel()