Home
last modified time | relevance | path

Searched refs:processedClusters (Results 1 – 3 of 3) sorted by relevance

/dports/biology/bbmap/bbmap/current/jgi/
H A DDedupeProtein.java741 processedClusters=new ArrayList<ArrayList<Unit>>(); in findOverlaps()
1046 for(ArrayList<Unit> alu : processedClusters){ in renameClusters()
1110 processedClusters.addAll(ct.processedT); in processMst()
1373 if(processedClusters==null || processedClusters.isEmpty()){ in writeOutput()
1394 writeGraph(outgraph, processedClusters); in writeOutput()
1397 writeOutputClusters(clusterStatsFile, processedClusters); in writeOutput()
2008 synchronized(processedClusters){ in run()
2009 processedClusters.addAll(processedClustersT); in run()
2014 synchronized(processedClusters){ in run()
2015 processedClusters.addAll(processedClustersT); in run()
[all …]
H A DDedupe.java774 processedClusters=new ArrayList<ArrayList<Unit>>(); in findOverlaps()
1079 for(ArrayList<Unit> alu : processedClusters){ in renameClusters()
1143 processedClusters.addAll(ct.processedT); in processMst()
1414 if(processedClusters==null || processedClusters.isEmpty()){ in writeOutput()
1435 writeGraph(outgraph, processedClusters); in writeOutput()
1438 writeOutputClusters(clusterStatsFile, processedClusters); in writeOutput()
2131 synchronized(processedClusters){
2132 processedClusters.addAll(processedClustersT);
2137 synchronized(processedClusters){
2138 processedClusters.addAll(processedClustersT);
[all …]
H A DDedupe2.java738 processedClusters=new ArrayList<ArrayList<Unit>>(); in findOverlaps()
1043 for(ArrayList<Unit> alu : processedClusters){ in renameClusters()
1107 processedClusters.addAll(ct.processedT); in processMst()
1345 if(processedClusters==null || processedClusters.isEmpty()){ in writeOutput()
1366 writeGraph(outgraph, processedClusters); in writeOutput()
1369 writeOutputClusters(clusterStatsFile, processedClusters); in writeOutput()
2057 synchronized(processedClusters){
2058 processedClusters.addAll(processedClustersT);
2063 synchronized(processedClusters){
2064 processedClusters.addAll(processedClustersT);
[all …]