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Searched refs:processedClustersT (Results 1 – 3 of 3) sorted by relevance

/dports/biology/bbmap/bbmap/current/jgi/
H A DDedupeProtein.java2006 processedClustersT.add(cluster); in run()
2007 if(processedClustersT.size()>=threadMaxReadsToBuffer){ in run()
2009 processedClusters.addAll(processedClustersT); in run()
2010 processedClustersT.clear(); in run()
2015 processedClusters.addAll(processedClustersT); in run()
2016 processedClustersT.clear(); in run()
2041 processedClustersT.add(subcluster); in fullyPruneCluster()
2574 …private ArrayList<ArrayList<Unit>> processedClustersT=new ArrayList<ArrayList<Unit>>(threadMaxRead… field in DedupeProtein.ClusterThread
H A DDedupe.java2129 processedClustersT.add(cluster); in processedClustersT.add()
2130 if(processedClustersT.size()>=threadMaxReadsToBuffer){
2132 processedClusters.addAll(processedClustersT);
2133 processedClustersT.clear(); in processedClustersT.clear()
2138 processedClusters.addAll(processedClustersT);
2139 processedClustersT.clear(); in processedClustersT.clear()
2164 processedClustersT.add(subcluster);
2886 …private ArrayList<ArrayList<Unit>> processedClustersT=new ArrayList<ArrayList<Unit>>(threadMaxRead…
H A DDedupe2.java2055 processedClustersT.add(cluster); in processedClustersT.add()
2056 if(processedClustersT.size()>=threadMaxReadsToBuffer){
2058 processedClusters.addAll(processedClustersT);
2059 processedClustersT.clear(); in processedClustersT.clear()
2064 processedClusters.addAll(processedClustersT);
2065 processedClustersT.clear(); in processedClustersT.clear()
2090 processedClustersT.add(subcluster);
2812 …private ArrayList<ArrayList<Unit>> processedClustersT=new ArrayList<ArrayList<Unit>>(threadMaxRead…