| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/ |
| H A D | data_loader.hpp | 236 static bool IsProcessedNA(const string& na, const TProcessedNAs* processed_nas);
237 static void SetProcessedNA(const string& na, TProcessedNAs* processed_nas);
272 TProcessedNAs* processed_nas);
275 TProcessedNAs* processed_nas);
278 TProcessedNAs* processed_nas);
281 TProcessedNAs* processed_nas);
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/ |
| H A D | data_loader.hpp | 236 static bool IsProcessedNA(const string& na, const TProcessedNAs* processed_nas);
237 static void SetProcessedNA(const string& na, TProcessedNAs* processed_nas);
272 TProcessedNAs* processed_nas);
275 TProcessedNAs* processed_nas);
278 TProcessedNAs* processed_nas);
281 TProcessedNAs* processed_nas);
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/data_loaders/genbank/ |
| H A D | psg_loader.cpp | 147 TProcessedNAs* processed_nas) in GetOrphanAnnotRecordsNA() argument
155 TProcessedNAs* processed_nas) in GetExternalAnnotRecordsNA() argument
157 return m_Impl->GetAnnotRecordsNA(GetDataSource(), idh, sel, processed_nas); in GetExternalAnnotRecordsNA()
163 TProcessedNAs* processed_nas) in GetExternalAnnotRecordsNA() argument
167 TTSE_LockSet ret2 = m_Impl->GetAnnotRecordsNA(GetDataSource(), *it, sel, processed_nas); in GetExternalAnnotRecordsNA()
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| H A D | gbnative.cpp | 1291 TProcessedNAs* processed_nas) in GetExternalAnnotRecordsNA() argument
1293 return x_GetRecords(idh, fBlobHasExtAnnot|fBlobHasNamedAnnot, sel, processed_nas); in GetExternalAnnotRecordsNA()
1300 TProcessedNAs* processed_nas) in GetExternalAnnotRecordsNA() argument
1308 TTSE_LockSet ret2 = GetExternalAnnotRecordsNA(*it, sel, processed_nas); in GetExternalAnnotRecordsNA()
1324 TProcessedNAs* processed_nas) in GetOrphanAnnotRecordsNA() argument
1337 return x_GetRecords(idh, mask, sel, processed_nas); in GetOrphanAnnotRecordsNA()
1340 return CDataLoader::GetOrphanAnnotRecordsNA(idh, sel, processed_nas); in GetOrphanAnnotRecordsNA()
1349 TProcessedNAs* processed_nas) in x_GetRecords() argument
1398 if ( processed_nas ) { in x_GetRecords()
1401 CDataLoader::SetProcessedNA(acc, processed_nas); in x_GetRecords()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/data_loaders/genbank/ |
| H A D | psg_loader.hpp | 80 TProcessedNAs* processed_nas) override;
83 TProcessedNAs* processed_nas) override;
86 TProcessedNAs* processed_nas) override;
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| H A D | gbnative.hpp | 154 TProcessedNAs* processed_nas) override;
157 TProcessedNAs* processed_nas) override;
160 TProcessedNAs* processed_nas) override;
286 TProcessedNAs* processed_nas = 0);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/data_loaders/genbank/ |
| H A D | psg_loader.cpp | 223 TProcessedNAs* processed_nas) in GetOrphanAnnotRecordsNA() argument
231 TProcessedNAs* processed_nas) in GetExternalAnnotRecordsNA() argument
233 return m_Impl->GetAnnotRecordsNA(GetDataSource(), idh, sel, processed_nas); in GetExternalAnnotRecordsNA()
289 TProcessedNAs* processed_nas) in GetExternalAnnotRecordsNA() argument
295 TTSE_LockSet ret2 = m_Impl->GetAnnotRecordsNA(GetDataSource(), *it, sel, processed_nas); in GetExternalAnnotRecordsNA()
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| H A D | gbnative.cpp | 1298 TProcessedNAs* processed_nas) in GetExternalAnnotRecordsNA() argument
1300 return x_GetRecords(idh, fBlobHasExtAnnot|fBlobHasNamedAnnot, sel, processed_nas); in GetExternalAnnotRecordsNA()
1307 TProcessedNAs* processed_nas) in GetExternalAnnotRecordsNA() argument
1315 TTSE_LockSet ret2 = GetExternalAnnotRecordsNA(*it, sel, processed_nas); in GetExternalAnnotRecordsNA()
1331 TProcessedNAs* processed_nas) in GetOrphanAnnotRecordsNA() argument
1344 return x_GetRecords(idh, mask, sel, processed_nas); in GetOrphanAnnotRecordsNA()
1347 return CDataLoader::GetOrphanAnnotRecordsNA(idh, sel, processed_nas); in GetOrphanAnnotRecordsNA()
1356 TProcessedNAs* processed_nas) in x_GetRecords() argument
1405 if ( processed_nas ) { in x_GetRecords()
1408 CDataLoader::SetProcessedNA(acc, processed_nas); in x_GetRecords()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/ |
| H A D | data_loader.cpp | 215 const TProcessedNAs* processed_nas) in IsProcessedNA() argument
217 return processed_nas && processed_nas->find(na) == processed_nas->end(); in IsProcessedNA()
222 TProcessedNAs* processed_nas) in SetProcessedNA() argument
224 if ( processed_nas ) { in SetProcessedNA()
225 processed_nas->insert(na); in SetProcessedNA()
243 TProcessedNAs* processed_nas) in GetOrphanAnnotRecordsNA() argument
248 GetOrphanAnnotRecordsNA(*id_it, sel, processed_nas); in GetOrphanAnnotRecordsNA()
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| H A D | scope_impl.cpp | 2446 CDataLoader::TProcessedNAs processed_nas; in x_GetTSESetWithOrphanAnnots() local
2461 ds_lock, sel, &processed_nas); in x_GetTSESetWithOrphanAnnots()
2464 ds.GetTSESetWithOrphanAnnots(ids, ds_lock, sel, &processed_nas); in x_GetTSESetWithOrphanAnnots()
2466 if ( sel && !processed_nas.empty() ) { in x_GetTSESetWithOrphanAnnots()
2471 for ( auto& na : processed_nas ) { in x_GetTSESetWithOrphanAnnots()
2474 processed_nas.clear(); in x_GetTSESetWithOrphanAnnots()
2490 CDataLoader::TProcessedNAs processed_nas; in x_GetTSESetWithBioseqAnnots() local
2515 ds_lock, sel, &processed_nas); in x_GetTSESetWithBioseqAnnots()
2533 if ( sel && !processed_nas.empty() ) { in x_GetTSESetWithBioseqAnnots()
2538 for ( auto& na : processed_nas ) { in x_GetTSESetWithBioseqAnnots()
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/ |
| H A D | data_loader.cpp | 215 const TProcessedNAs* processed_nas) in IsProcessedNA() argument
217 return processed_nas && processed_nas->find(na) == processed_nas->end(); in IsProcessedNA()
222 TProcessedNAs* processed_nas) in SetProcessedNA() argument
224 if ( processed_nas ) { in SetProcessedNA()
225 processed_nas->insert(na); in SetProcessedNA()
243 TProcessedNAs* processed_nas) in GetOrphanAnnotRecordsNA() argument
248 GetOrphanAnnotRecordsNA(*id_it, sel, processed_nas); in GetOrphanAnnotRecordsNA()
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| H A D | scope_impl.cpp | 2446 CDataLoader::TProcessedNAs processed_nas; in x_GetTSESetWithOrphanAnnots() local
2461 ds_lock, sel, &processed_nas); in x_GetTSESetWithOrphanAnnots()
2464 ds.GetTSESetWithOrphanAnnots(ids, ds_lock, sel, &processed_nas); in x_GetTSESetWithOrphanAnnots()
2466 if ( sel && !processed_nas.empty() ) { in x_GetTSESetWithOrphanAnnots()
2471 for ( auto& na : processed_nas ) { in x_GetTSESetWithOrphanAnnots()
2474 processed_nas.clear(); in x_GetTSESetWithOrphanAnnots()
2490 CDataLoader::TProcessedNAs processed_nas; in x_GetTSESetWithBioseqAnnots() local
2515 ds_lock, sel, &processed_nas); in x_GetTSESetWithBioseqAnnots()
2533 if ( sel && !processed_nas.empty() ) { in x_GetTSESetWithBioseqAnnots()
2538 for ( auto& na : processed_nas ) { in x_GetTSESetWithBioseqAnnots()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/data_loaders/genbank/ |
| H A D | psg_loader.hpp | 115 TProcessedNAs* processed_nas) override;
118 TProcessedNAs* processed_nas) override;
121 TProcessedNAs* processed_nas) override;
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| H A D | gbnative.hpp | 154 TProcessedNAs* processed_nas) override;
157 TProcessedNAs* processed_nas) override;
160 TProcessedNAs* processed_nas) override;
286 TProcessedNAs* processed_nas = 0);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/data_loaders/cdd/cdd_loader/ |
| H A D | cdd_loader.hpp | 85 TProcessedNAs* processed_nas) override;
88 TProcessedNAs* processed_nas) override;
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/impl/ |
| H A D | data_source.hpp | 198 CDataLoader::TProcessedNAs* processed_nas = 0);
205 CDataLoader::TProcessedNAs* processed_nas = 0,
212 CDataLoader::TProcessedNAs* processed_nas = 0) in GetTSESetWithExternalAnnots() argument
214 GetTSESetWithBioseqAnnots(bioseq, tse, tse_set, sel, processed_nas, true); in GetTSESetWithExternalAnnots()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/impl/ |
| H A D | data_source.hpp | 198 CDataLoader::TProcessedNAs* processed_nas = 0);
205 CDataLoader::TProcessedNAs* processed_nas = 0,
212 CDataLoader::TProcessedNAs* processed_nas = 0) in GetTSESetWithExternalAnnots() argument
214 GetTSESetWithBioseqAnnots(bioseq, tse, tse_set, sel, processed_nas, true); in GetTSESetWithExternalAnnots()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/vdbgraph/ |
| H A D | vdbgraphloader.cpp | 241 TProcessedNAs* processed_nas) in GetOrphanAnnotRecordsNA() argument
243 return m_Impl->GetOrphanAnnotRecords(GetDataSource(), idh, sel, processed_nas); in GetOrphanAnnotRecordsNA()
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| H A D | vdbgraphloader_impl.cpp | 354 CDataLoader::TProcessedNAs* processed_nas) in GetOrphanAnnotRecords() argument
360 CDataLoader::SetProcessedNA(it.second->m_BaseAnnotName, processed_nas); in GetOrphanAnnotRecords()
383 CDataLoader::SetProcessedNA(it->first, processed_nas); in GetOrphanAnnotRecords()
390 CDataLoader::SetProcessedNA(it->first, processed_nas); in GetOrphanAnnotRecords()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/data_loaders/genbank/impl/ |
| H A D | psg_loader_impl.hpp | 157 CDataLoader::TProcessedNAs* processed_nas);
161 CDataLoader::TProcessedNAs* processed_nas);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/sra/data_loaders/vdbgraph/impl/ |
| H A D | vdbgraphloader_impl.hpp | 74 CDataLoader::TProcessedNAs* processed_nas);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/snp/ |
| H A D | snploader.cpp | 305 TProcessedNAs* processed_nas) in GetOrphanAnnotRecordsNA() argument
307 return m_Impl->GetOrphanAnnotRecords(GetDataSource(), idh, sel, processed_nas); in GetOrphanAnnotRecordsNA()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/data_loaders/cdd/cdd_loader/ |
| H A D | cdd_loader.cpp | 208 TProcessedNAs* processed_nas) in GetOrphanAnnotRecordsNA() argument
219 TProcessedNAs* processed_nas) in GetOrphanAnnotRecordsNA() argument
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/sra/data_loaders/vdbgraph/ |
| H A D | vdbgraphloader.hpp | 98 TProcessedNAs* processed_nas) override;
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/sra/data_loaders/snp/ |
| H A D | snploader.hpp | 122 TProcessedNAs* processed_nas) override;
|