Searched refs:prod_bsh (Results 1 – 4 of 4) sorted by relevance
142 CBioseq_Handle prod_bsh = scope.GetBioseqHandle(align.GetSeq_id(0)); in s_GetSplicedSegIdentityMismatch() local144 if ( !prod_bsh || !genomic_bsh ) { in s_GetSplicedSegIdentityMismatch()151 CSeqVector prod(prod_bsh, CBioseq_Handle::eCoding_Iupac); in s_GetSplicedSegIdentityMismatch()
401 CBioseq_Handle prod_bsh = in x_SetSequence() local403 CSeqVector prod_vec(prod_bsh, CBioseq_Handle::eCoding_Iupac, in x_SetSequence()
2792 CBioseq_Handle prod_bsh = m_scope->GetBioseqHandle(*feat.GetProduct().GetId()); in x_HandleRnaExceptions() local2793 if ( !prod_bsh ) { in x_HandleRnaExceptions()2800 if (loc_len > prod_bsh.GetBioseqLength()) { in x_HandleRnaExceptions()2875 max_align_len = prod_bsh.GetBioseqLength(); in x_HandleRnaExceptions()2902 CSeqVector rna_vec(prod_bsh, in x_HandleRnaExceptions()