Searched +refs:profile +refs:merMod (Results 1 – 14 of 14) sorted by relevance
/dports/math/R-cran-lme4/lme4/man/ |
H A D | confint.merMod.Rd | 1 \name{confint.merMod} 2 \alias{confint.merMod} 7 model fit (of class\code{"\linkS4class{merMod}"}). 10 \method{confint}{merMod}(object, parm, level = 0.95, 11 method = c("profile", "Wald", "boot"), zeta, 28 \code{which} parameter of \code{\link[=profile.merMod]{profile}}.} 47 \code{\link{profile}}).} 51 \code{\link{profile.merMod}} or \code{\link{bootMer}}, respectively.} 62 where the \code{\link{profile}} method \code{\link{profile.merMod}} 64 advisable to store the \link[=profile.merMod]{profile(.)} result, say [all …]
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H A D | merMod-class.Rd | 2 \name{merMod-class} 4 \alias{anova.merMod} 6 \alias{coef.merMod} 10 \alias{family.merMod} 11 \alias{fitted.merMod} 16 \alias{merMod} 17 \alias{merMod-class} 20 \alias{ngrps.merMod} 21 \alias{nobs.merMod} 27 \alias{show.merMod} [all …]
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H A D | profile-methods.Rd | 1 \name{profile-methods} 2 \title{Profile method for merMod objects} 8 \alias{profile-methods} 9 \alias{profile.merMod} 20 \method{profile}{merMod}(fitted, which = NULL, alphamax = 0.01, 93 \code{profile})} 118 \code{profile(<merMod>)} returns an object of S3 class 121 Notable methods for such a profile object 123 confidence intervals based on the profile, 157 \code{profile()} call is a more computationally [all …]
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H A D | pvalues.Rd | 32 \item{profile confidence intervals via \code{\link{profile.merMod}} and 33 \code{\link{confint.merMod}} (CI,+)
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H A D | bootMer.Rd | 12 \item{x}{a fitted \code{merMod} object: see 15 \code{merMod} object as input and returning the 31 See \code{\link{simulate.merMod}} for details.} 82 (see \link{simulate.merMod}), but we want to emphasize its potential 122 \item \code{\link{confint.merMod}}, 130 \item \code{\link{profile-methods}}, for likelihood-based inference, 140 ## see ?"profile-methods"
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H A D | plots.thpr.Rd | 8 profile. 13 \code{densityplot()} draws the profile densities. 15 \code{splom()} draws profile pairs plots. Contours are for the 33 \item{x}{a mixed-effects profile, i.e., of class \code{"thpr"}, 34 typically resulting from \code{\link{profile}(fm)} where \code{fm} 49 to profile: default is all parameters (see 50 \code{\link{profile-methods}} 58 \seealso{ \code{\link[=profile-methods]{profile}}, notably for an 72 ## see example("profile.merMod")
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H A D | devfun2.Rd | 19 \item{fm}{a fitted model inheriting from class \code{"\linkS4class{merMod}"}.} 21 has been in the model or should be used.}% FIXME, see also ../R/profile.R
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H A D | isSingular.Rd | 15 \item{x}{a fitted \code{merMod} object (result of \code{lmer} or \code{glmer}).} 48 difficult to compute profile confidence intervals for such
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/dports/math/R-cran-lme4/lme4/ |
H A D | NAMESPACE | 23 predict, printCoefmat, profile, pt, qchisq, qnorm, 170 S3method(anova,merMod) 177 S3method(coef,merMod) 181 export(confint.merMod) 193 S3method(drop1,merMod) 200 S3method(fixef,merMod) 205 export(fortify.merMod) 219 S3method(nobs,merMod) 222 S3method(plot,merMod) 231 S3method(profile,merMod) [all …]
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H A D | MD5 | 24 03985634eecd09bb6b05f632561d4705 *R/profile.R 115 e8c328e780f66ab6f618955e21d47a40 *man/confint.merMod.Rd 119 a934cdd2a196abbc1e9f332281077ede *man/drop1.merMod.Rd 134 c4236aab077a04046402a23b86635a7b *man/hatvalues.merMod.Rd 135 a68e2467e44316a346f4daf8bfba3e31 *man/influence.merMod.Rd 147 df533cd38910400a5ab43780b0b6fb79 *man/merMod-class.Rd 161 ae39efc87a8522d809a0c321a21700a9 *man/plot.merMod.Rd 163 64af082bc4529a6d9f595582cc5bc34d *man/predict.merMod.Rd 164 f852d5eb7fcdf0543f88bfdb40b161a7 *man/profile-methods.Rd 175 2634e59be2d2b111be165c68847ebaf1 *man/simulate.merMod.Rd [all …]
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H A D | ChangeLog | 6 * R/lmer.R, R/profile.R, tests/lmer-1.R: Nlmer now working (for nAGQ=1). 7 Updated tests and got profile working again. 89 * R/profile.R: More fixing of labels. Fix up strip names to 94 * R/profile.R: Profiling now works for lmer models with variance 104 * R/profile.R: Got profile working for cases where the number of 155 * man/lmerMod-class.Rd, man/merMod-class.Rd, man/merPredD-class.Rd: 156 incorporate documentation for [gn]lmerMod-class in the merMod-class 216 * R/AllClass.R, R/lmer.R: Reinstitute the Gp slot in merMod objects 271 * R/lmer.R: Clean up printMer and summary.merMod 328 man/lmer.Rd, man/lmerMod-class.Rd, man/merMod-class.Rd, [all …]
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/dports/math/R-cran-lme4/lme4/inst/ |
H A D | NEWS.Rd | 92 Additionally, \code{profile}/\code{confint} for GLMMs 223 \code{?influence.merMod}) 270 for \code{merMod} objects 325 method \code{"profile"}. 357 already-computed profile now respects "theta_"/"beta_" 386 \item added \code{prof.scale} argument to \code{profile.merMod}, 717 \code{fortify.merMod} explicitly. 791 \item when using the default \code{method="profile"}, 822 \item \code{confint.merMod} and \code{vcov.merMod} are 988 \code{link{profile-methods}}). [all …]
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/dports/math/R-cran-lme4/lme4/inst/doc/ |
H A D | lmer.Rnw | 1902 matrix can be extracted from a fitted \code{merMod} object as, 2246 \code{profile} (\ref{sec:profile}) & 2279 methods (Table~\ref{tab:methods}) for objects of class \code{merMod}, 2288 To illustrate the \code{update} method for `\code{merMod}' objects we 2300 The \code{summary} method for `\code{merMod}' objects provides 2442 Objects of class `\code{merMod}' have an \code{anova} method which 2535 machinery for calculating $p$~values associated with `\code{merMod}' 2537 likelihood ratio test (achieved by supplying multiple `\code{merMod}' 2586 fitted `\code{merMod}' objects (in which case profiling is done as an 2700 `\code{merMod}' object) is the basis of parametric bootstrapping [all …]
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/dports/math/R-cran-lme4/lme4/vignettes/ |
H A D | lmer.Rnw | 1902 matrix can be extracted from a fitted \code{merMod} object as, 2246 \code{profile} (\ref{sec:profile}) & 2279 methods (Table~\ref{tab:methods}) for objects of class \code{merMod}, 2288 To illustrate the \code{update} method for `\code{merMod}' objects we 2300 The \code{summary} method for `\code{merMod}' objects provides 2442 Objects of class `\code{merMod}' have an \code{anova} method which 2535 machinery for calculating $p$~values associated with `\code{merMod}' 2537 likelihood ratio test (achieved by supplying multiple `\code{merMod}' 2586 fitted `\code{merMod}' objects (in which case profiling is done as an 2700 `\code{merMod}' object) is the basis of parametric bootstrapping [all …]
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