Home
last modified time | relevance | path

Searched +refs:profile +refs:merMod (Results 1 – 14 of 14) sorted by relevance

/dports/math/R-cran-lme4/lme4/man/
H A Dconfint.merMod.Rd1 \name{confint.merMod}
2 \alias{confint.merMod}
7 model fit (of class\code{"\linkS4class{merMod}"}).
10 \method{confint}{merMod}(object, parm, level = 0.95,
11 method = c("profile", "Wald", "boot"), zeta,
28 \code{which} parameter of \code{\link[=profile.merMod]{profile}}.}
47 \code{\link{profile}}).}
51 \code{\link{profile.merMod}} or \code{\link{bootMer}}, respectively.}
62 where the \code{\link{profile}} method \code{\link{profile.merMod}}
64 advisable to store the \link[=profile.merMod]{profile(.)} result, say
[all …]
H A DmerMod-class.Rd2 \name{merMod-class}
4 \alias{anova.merMod}
6 \alias{coef.merMod}
10 \alias{family.merMod}
11 \alias{fitted.merMod}
16 \alias{merMod}
17 \alias{merMod-class}
20 \alias{ngrps.merMod}
21 \alias{nobs.merMod}
27 \alias{show.merMod}
[all …]
H A Dprofile-methods.Rd1 \name{profile-methods}
2 \title{Profile method for merMod objects}
8 \alias{profile-methods}
9 \alias{profile.merMod}
20 \method{profile}{merMod}(fitted, which = NULL, alphamax = 0.01,
93 \code{profile})}
118 \code{profile(<merMod>)} returns an object of S3 class
121 Notable methods for such a profile object
123 confidence intervals based on the profile,
157 \code{profile()} call is a more computationally
[all …]
H A Dpvalues.Rd32 \item{profile confidence intervals via \code{\link{profile.merMod}} and
33 \code{\link{confint.merMod}} (CI,+)
H A DbootMer.Rd12 \item{x}{a fitted \code{merMod} object: see
15 \code{merMod} object as input and returning the
31 See \code{\link{simulate.merMod}} for details.}
82 (see \link{simulate.merMod}), but we want to emphasize its potential
122 \item \code{\link{confint.merMod}},
130 \item \code{\link{profile-methods}}, for likelihood-based inference,
140 ## see ?"profile-methods"
H A Dplots.thpr.Rd8 profile.
13 \code{densityplot()} draws the profile densities.
15 \code{splom()} draws profile pairs plots. Contours are for the
33 \item{x}{a mixed-effects profile, i.e., of class \code{"thpr"},
34 typically resulting from \code{\link{profile}(fm)} where \code{fm}
49 to profile: default is all parameters (see
50 \code{\link{profile-methods}}
58 \seealso{ \code{\link[=profile-methods]{profile}}, notably for an
72 ## see example("profile.merMod")
H A Ddevfun2.Rd19 \item{fm}{a fitted model inheriting from class \code{"\linkS4class{merMod}"}.}
21 has been in the model or should be used.}% FIXME, see also ../R/profile.R
H A DisSingular.Rd15 \item{x}{a fitted \code{merMod} object (result of \code{lmer} or \code{glmer}).}
48 difficult to compute profile confidence intervals for such
/dports/math/R-cran-lme4/lme4/
H A DNAMESPACE23 predict, printCoefmat, profile, pt, qchisq, qnorm,
170 S3method(anova,merMod)
177 S3method(coef,merMod)
181 export(confint.merMod)
193 S3method(drop1,merMod)
200 S3method(fixef,merMod)
205 export(fortify.merMod)
219 S3method(nobs,merMod)
222 S3method(plot,merMod)
231 S3method(profile,merMod)
[all …]
H A DMD524 03985634eecd09bb6b05f632561d4705 *R/profile.R
115 e8c328e780f66ab6f618955e21d47a40 *man/confint.merMod.Rd
119 a934cdd2a196abbc1e9f332281077ede *man/drop1.merMod.Rd
134 c4236aab077a04046402a23b86635a7b *man/hatvalues.merMod.Rd
135 a68e2467e44316a346f4daf8bfba3e31 *man/influence.merMod.Rd
147 df533cd38910400a5ab43780b0b6fb79 *man/merMod-class.Rd
161 ae39efc87a8522d809a0c321a21700a9 *man/plot.merMod.Rd
163 64af082bc4529a6d9f595582cc5bc34d *man/predict.merMod.Rd
164 f852d5eb7fcdf0543f88bfdb40b161a7 *man/profile-methods.Rd
175 2634e59be2d2b111be165c68847ebaf1 *man/simulate.merMod.Rd
[all …]
H A DChangeLog6 * R/lmer.R, R/profile.R, tests/lmer-1.R: Nlmer now working (for nAGQ=1).
7 Updated tests and got profile working again.
89 * R/profile.R: More fixing of labels. Fix up strip names to
94 * R/profile.R: Profiling now works for lmer models with variance
104 * R/profile.R: Got profile working for cases where the number of
155 * man/lmerMod-class.Rd, man/merMod-class.Rd, man/merPredD-class.Rd:
156 incorporate documentation for [gn]lmerMod-class in the merMod-class
216 * R/AllClass.R, R/lmer.R: Reinstitute the Gp slot in merMod objects
271 * R/lmer.R: Clean up printMer and summary.merMod
328 man/lmer.Rd, man/lmerMod-class.Rd, man/merMod-class.Rd,
[all …]
/dports/math/R-cran-lme4/lme4/inst/
H A DNEWS.Rd92 Additionally, \code{profile}/\code{confint} for GLMMs
223 \code{?influence.merMod})
270 for \code{merMod} objects
325 method \code{"profile"}.
357 already-computed profile now respects "theta_"/"beta_"
386 \item added \code{prof.scale} argument to \code{profile.merMod},
717 \code{fortify.merMod} explicitly.
791 \item when using the default \code{method="profile"},
822 \item \code{confint.merMod} and \code{vcov.merMod} are
988 \code{link{profile-methods}}).
[all …]
/dports/math/R-cran-lme4/lme4/inst/doc/
H A Dlmer.Rnw1902 matrix can be extracted from a fitted \code{merMod} object as,
2246 \code{profile} (\ref{sec:profile}) &
2279 methods (Table~\ref{tab:methods}) for objects of class \code{merMod},
2288 To illustrate the \code{update} method for `\code{merMod}' objects we
2300 The \code{summary} method for `\code{merMod}' objects provides
2442 Objects of class `\code{merMod}' have an \code{anova} method which
2535 machinery for calculating $p$~values associated with `\code{merMod}'
2537 likelihood ratio test (achieved by supplying multiple `\code{merMod}'
2586 fitted `\code{merMod}' objects (in which case profiling is done as an
2700 `\code{merMod}' object) is the basis of parametric bootstrapping
[all …]
/dports/math/R-cran-lme4/lme4/vignettes/
H A Dlmer.Rnw1902 matrix can be extracted from a fitted \code{merMod} object as,
2246 \code{profile} (\ref{sec:profile}) &
2279 methods (Table~\ref{tab:methods}) for objects of class \code{merMod},
2288 To illustrate the \code{update} method for `\code{merMod}' objects we
2300 The \code{summary} method for `\code{merMod}' objects provides
2442 Objects of class `\code{merMod}' have an \code{anova} method which
2535 machinery for calculating $p$~values associated with `\code{merMod}'
2537 likelihood ratio test (achieved by supplying multiple `\code{merMod}'
2586 fitted `\code{merMod}' objects (in which case profiling is done as an
2700 `\code{merMod}' object) is the basis of parametric bootstrapping
[all …]