Home
last modified time | relevance | path

Searched refs:putRqc (Results 1 – 4 of 4) sorted by relevance

/dports/biology/bbmap/bbmap/current/jgi/
H A DBBDuk2.java1221 putRqc("inputReads", readsIn, false); in addToRqcMap()
1222 putRqc("inputBases", basesIn, false); in addToRqcMap()
1224 putRqc("qtrimmedReads", readsQTrimmed, false); in addToRqcMap()
1225 putRqc("qtrimmedBases", basesQTrimmed, false); in addToRqcMap()
1227 putRqc("qfilteredReads", readsQFiltered, false); in addToRqcMap()
1228 putRqc("qfilteredBases", basesQFiltered, false); in addToRqcMap()
1231 putRqc("ktrimmedReads", readsKTrimmed, true); in addToRqcMap()
1232 putRqc("ktrimmedBases", basesKTrimmed, true); in addToRqcMap()
1237 putRqc("outputReads", readsOut, true); in addToRqcMap()
1238 putRqc("outputBases", basesOut, true); in addToRqcMap()
[all …]
H A DSeal.java819 BBDuk.putRqc("inputReads", readsIn, false, false);
820 BBDuk.putRqc("inputBases", basesIn, false, false);
822 BBDuk.putRqc("qtrimmedReads", readsQTrimmed, false, true);
823 BBDuk.putRqc("qtrimmedBases", basesQTrimmed, false, true);
825 BBDuk.putRqc("qfilteredReads", readsQFiltered, false, true);
826 BBDuk.putRqc("qfilteredBases", basesQFiltered, false, true);
829 BBDuk.putRqc("kfilteredReads", readsMatched, false, true);
830 BBDuk.putRqc("kfilteredBases", basesMatched, false, true);
832 BBDuk.putRqc("outputReads", readsUnmatched, true, false);
833 BBDuk.putRqc("outputBases", basesUnmatched, true, false);
H A DBBDuk.java1602 putRqc("inputReads", readsIn, false, false); in addToRqcMap()
1603 putRqc("inputBases", basesIn, false, false); in addToRqcMap()
1605 putRqc("qtrimmedReads", readsQTrimmed, false, true); in addToRqcMap()
1606 putRqc("qtrimmedBases", basesQTrimmed, false, true); in addToRqcMap()
1608 putRqc("qfilteredReads", readsQFiltered, false, true); in addToRqcMap()
1609 putRqc("qfilteredBases", basesQFiltered, false, true); in addToRqcMap()
1612 putRqc("ktrimmedReads", readsKTrimmed, true, true); in addToRqcMap()
1613 putRqc("ktrimmedBases", basesKTrimmed, true, true); in addToRqcMap()
1615 putRqc("kfilteredReads", readsKFiltered, false, true); in addToRqcMap()
1618 putRqc("outputReads", readsOut, true, false); in addToRqcMap()
[all …]
H A DRQCFilter2.java1494 BBDuk.putRqc("outputReads", BBMerge.readsProcessedTotal*2, true, false); in process()
1495 BBDuk.putRqc("outputBases", BBMerge.basesProcessedTotal, true, false); in process()