Searched refs:putRqc (Results 1 – 4 of 4) sorted by relevance
/dports/biology/bbmap/bbmap/current/jgi/ |
H A D | BBDuk2.java | 1221 putRqc("inputReads", readsIn, false); in addToRqcMap() 1222 putRqc("inputBases", basesIn, false); in addToRqcMap() 1224 putRqc("qtrimmedReads", readsQTrimmed, false); in addToRqcMap() 1225 putRqc("qtrimmedBases", basesQTrimmed, false); in addToRqcMap() 1227 putRqc("qfilteredReads", readsQFiltered, false); in addToRqcMap() 1228 putRqc("qfilteredBases", basesQFiltered, false); in addToRqcMap() 1231 putRqc("ktrimmedReads", readsKTrimmed, true); in addToRqcMap() 1232 putRqc("ktrimmedBases", basesKTrimmed, true); in addToRqcMap() 1237 putRqc("outputReads", readsOut, true); in addToRqcMap() 1238 putRqc("outputBases", basesOut, true); in addToRqcMap() [all …]
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H A D | Seal.java | 819 BBDuk.putRqc("inputReads", readsIn, false, false); 820 BBDuk.putRqc("inputBases", basesIn, false, false); 822 BBDuk.putRqc("qtrimmedReads", readsQTrimmed, false, true); 823 BBDuk.putRqc("qtrimmedBases", basesQTrimmed, false, true); 825 BBDuk.putRqc("qfilteredReads", readsQFiltered, false, true); 826 BBDuk.putRqc("qfilteredBases", basesQFiltered, false, true); 829 BBDuk.putRqc("kfilteredReads", readsMatched, false, true); 830 BBDuk.putRqc("kfilteredBases", basesMatched, false, true); 832 BBDuk.putRqc("outputReads", readsUnmatched, true, false); 833 BBDuk.putRqc("outputBases", basesUnmatched, true, false);
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H A D | BBDuk.java | 1602 putRqc("inputReads", readsIn, false, false); in addToRqcMap() 1603 putRqc("inputBases", basesIn, false, false); in addToRqcMap() 1605 putRqc("qtrimmedReads", readsQTrimmed, false, true); in addToRqcMap() 1606 putRqc("qtrimmedBases", basesQTrimmed, false, true); in addToRqcMap() 1608 putRqc("qfilteredReads", readsQFiltered, false, true); in addToRqcMap() 1609 putRqc("qfilteredBases", basesQFiltered, false, true); in addToRqcMap() 1612 putRqc("ktrimmedReads", readsKTrimmed, true, true); in addToRqcMap() 1613 putRqc("ktrimmedBases", basesKTrimmed, true, true); in addToRqcMap() 1615 putRqc("kfilteredReads", readsKFiltered, false, true); in addToRqcMap() 1618 putRqc("outputReads", readsOut, true, false); in addToRqcMap() [all …]
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H A D | RQCFilter2.java | 1494 BBDuk.putRqc("outputReads", BBMerge.readsProcessedTotal*2, true, false); in process() 1495 BBDuk.putRqc("outputBases", BBMerge.basesProcessedTotal, true, false); in process()
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