Searched refs:qHDist (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/bbmap/bbmap/current/kmer/ |
| H A D | TableReader.java | 409 …public final int getValue(final long kmer, final long rkmer, final int len, final int qHDist, fina… in getValue() argument
411 return qHDist<1 ? getValue(kmer, rkmer, len, sets) : getValue(kmer, rkmer, len, qHDist, sets); in getValue()
424 …public final int getValue(final long kmer, final long rkmer, final int len, final int qHDist, fina… in getValue() argument
426 if(id<1 && qHDist>0){ in getValue()
427 final int qHDistMinusOne=qHDist-1; in getValue()
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| /dports/biology/bbmap/bbmap/current/jgi/ |
| H A D | Seal.java | 2528 …g rkmer, final long lengthMask, final int qPos, final int len, final int qHDist, final AbstractKme…
2529 if(qHDist>0){return getValuesQHD(kmer, rkmer, lengthMask, qPos, len, qHDist, sets, qhList);}
2531 if((ids==null || ids[0]<0) && qHDist>0){
2532 final int qHDist2=qHDist-1;
2549 …g rkmer, final long lengthMask, final int qPos, final int len, final int qHDist, final AbstractKme…
2550 assert(qHDist>0);
2552 getValuesQHD_inner(kmer, rkmer, lengthMask, qPos, len, qHDist, sets, list);
2564 …g rkmer, final long lengthMask, final int qPos, final int len, final int qHDist, final AbstractKme…
2573 if(qHDist>0){
2574 final int qHDist2=qHDist-1;
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| H A D | BBDuk2.java | 2472 …g rkmer, final long lengthMask, final int qPos, final int len, final int qHDist, final AbstractKme… in getValue() argument
2474 if(id<1 && qHDist>0){ in getValue()
2475 final int qHDist2=qHDist-1; in getValue()
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| H A D | BBDuk.java | 3208 …g rkmer, final long lengthMask, final int qPos, final int len, final int qHDist, final AbstractKme… in getValue() argument
3212 if(id<1 && qHDist>0){ in getValue()
3213 final int qHDist2=qHDist-1; in getValue()
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