| /dports/biology/py-biopython/biopython-1.79/Bio/SearchIO/HmmerIO/ |
| H A D | hmmer3_domtab.py | 254 qaccw = max(10, len(first_qresult.acc))
257 qaccw, taccw = 10, 10
259 qnamew, tnamew, qaccw, taccw = 20, 20, 10, 10
263 % (tnamew + qnamew - 1 + 15 + taccw + qaccw, "", "--- full sequence ---",
270 "query name", qaccw, "accession", "qlen", "E-value", "score",
278 qnamew, "--------------------", qaccw, "----------",
296 qaccw = max(10, len(qresult.accession))
300 qaccw, taccw = 10, 10
335 qaccw,
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| H A D | hmmer3_tab.py | 257 qaccw = max(10, len(first_qresult.accession))
260 qnamew, tnamew, qaccw, taccw = 20, 20, 10, 10
264 % (tnamew + qnamew + taccw + qaccw + 2, "",
270 taccw, "accession", qnamew, "query name", qaccw,
278 taccw, "----------", qnamew, "--------------------", qaccw,
294 qaccw = max(10, len(qresult.accession))
308 qaccw,
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| /dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
| H A D | p7_tophits.c | 1555 int qaccw = ((qacc != NULL) ? ESL_MAX(10, strlen(qacc)) : 10); in p7_tophits_TabularTargets() local
1568 …------------------", taccw, "----------", qnamew, "--------------------", qaccw, "----------", "--… in p7_tophits_TabularTargets()
1573 …if (fprintf(ofp, "#%*s %22s %22s %33s\n", tnamew+qnamew+taccw+qaccw+2, "", "--- full sequence ----… in p7_tophits_TabularTargets()
1576 …target name", taccw, "accession", qnamew, "query name", qaccw, "accession", " … in p7_tophits_TabularTargets()
1579 …------------------", taccw, "----------", qnamew, "--------------------", qaccw, "----------", "--… in p7_tophits_TabularTargets()
1594 qaccw, ( (qacc != NULL && qacc[0] != '\0') ? qacc : "-"), in p7_tophits_TabularTargets()
1615 qaccw, ( (qacc != NULL && qacc[0] != '\0') ? qacc : "-"), in p7_tophits_TabularTargets()
1660 int qaccw = (qacc ? ESL_MAX(10, strlen(qacc)) : 10); in p7_tophits_TabularDomains() local
1667 …if (fprintf(ofp, "#%*s %22s %40s %11s %11s %11s\n", tnamew+qnamew-1+15+taccw+qaccw, "", … in p7_tophits_TabularDomains()
1673 …---------", taccw, "----------", "-----", qnamew, "--------------------", qaccw, "----------", "--… in p7_tophits_TabularDomains()
[all …]
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| /dports/biology/hmmer/hmmer-3.3/src/ |
| H A D | p7_tophits.c | 1555 int qaccw = ((qacc != NULL) ? ESL_MAX(10, strlen(qacc)) : 10); in p7_tophits_TabularTargets() local
1568 …------------------", taccw, "----------", qnamew, "--------------------", qaccw, "----------", "--… in p7_tophits_TabularTargets()
1573 …if (fprintf(ofp, "#%*s %22s %22s %33s\n", tnamew+qnamew+taccw+qaccw+2, "", "--- full sequence ----… in p7_tophits_TabularTargets()
1576 …target name", taccw, "accession", qnamew, "query name", qaccw, "accession", " … in p7_tophits_TabularTargets()
1579 …------------------", taccw, "----------", qnamew, "--------------------", qaccw, "----------", "--… in p7_tophits_TabularTargets()
1594 qaccw, ( (qacc != NULL && qacc[0] != '\0') ? qacc : "-"), in p7_tophits_TabularTargets()
1615 qaccw, ( (qacc != NULL && qacc[0] != '\0') ? qacc : "-"), in p7_tophits_TabularTargets()
1660 int qaccw = (qacc ? ESL_MAX(10, strlen(qacc)) : 10); in p7_tophits_TabularDomains() local
1667 …if (fprintf(ofp, "#%*s %22s %40s %11s %11s %11s\n", tnamew+qnamew-1+15+taccw+qaccw, "", … in p7_tophits_TabularDomains()
1673 …---------", taccw, "----------", "-----", qnamew, "--------------------", qaccw, "----------", "--… in p7_tophits_TabularDomains()
[all …]
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| /dports/biology/infernal/infernal-1.1.3/src/ |
| H A D | cm_tophits.c | 2235 int qaccw = ((qacc != NULL) ? ESL_MAX(9, strlen(qacc)) : 9); in cm_tophits_TabularTargets1() local
2248 ESL_ALLOC(qaccstr, sizeof(char) * (qaccw+1)); in cm_tophits_TabularTargets1()
2254 for(i = 0; i < qaccw; i++) { qaccstr[i] = '-'; } qaccstr[qaccw] = '\0'; in cm_tophits_TabularTargets1()
2261 tnamew-1, "target name", taccw, "accession", qnamew, "query name", qaccw, "accession", in cm_tophits_TabularTargets1()
2265 tnamew-1, tnamestr, taccw, taccstr, qnamew, qnamestr, qaccw, qaccstr, in cm_tophits_TabularTargets1()
2276 qaccw, ((qacc != NULL && qacc[0] != '\0') ? qacc : "-"), in cm_tophits_TabularTargets1()
2340 int qaccw = ((qacc != NULL) ? ESL_MAX(9, strlen(qacc)) : 9); in cm_tophits_TabularTargets2() local
2388 ESL_ALLOC(qaccstr, sizeof(char) * (qaccw+1)); in cm_tophits_TabularTargets2()
2405 for(i = 0; i < qaccw; i++) { qaccstr[i] = '-'; } qaccstr[qaccw] = '\0'; in cm_tophits_TabularTargets2()
2452 …idxw1-1, idxstr1, tnamew, tnamestr, taccw, taccstr, qnamew, qnamestr, qaccw, qaccstr, clanw, clans… in cm_tophits_TabularTargets2()
[all …]
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