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Searched refs:qcovar_file (Results 1 – 5 of 5) sorted by relevance

/dports/biology/gcta/gcta_1.26.0_src/
H A Dmlm_assoc.cpp15 …e, bool m_grm_flag, string subtract_grm_file, string phen_file, string qcovar_file, string covar_f… in mlma() argument
21 bool qcovar_flag=(!qcovar_file.empty()); in mlma()
37 qcovar_num=read_covar(qcovar_file, qcovar_ID, qcovar, true); in mlma()
346 void gcta::mlma_loco(string phen_file, string qcovar_file, string covar_file, int mphen, int MaxIte… in mlma_loco() argument
350 bool qcovar_flag=(!qcovar_file.empty()); in mlma_loco()
362 qcovar_num=read_covar(qcovar_file, qcovar_ID, qcovar, true); in mlma_loco()
H A Doption.cpp100 …string phen_file = "", qcovar_file = "", covar_file = "", qgxe_file = "", gxe_file = "", blup_indi… in option() local
651 qcovar_file = argv[++i]; in option()
652 cout << "--qcovar " << qcovar_file << endl; in option()
653 CommFunc::FileExist(qcovar_file); in option()
1064 …g) pter_gcta->mlma(grm_file, m_grm_flag, subtract_grm_file, phen_file, qcovar_file, covar_file, mp… in option()
1065 …else if (mlma_loco_flag) pter_gcta->mlma_loco(phen_file, qcovar_file, covar_file, mphen, MaxIter, … in option()
1113 …g) pter_gcta->mlma(grm_file, m_grm_flag, subtract_grm_file, phen_file, qcovar_file, covar_file, mp… in option()
1114 …else if (mlma_loco_flag) pter_gcta->mlma_loco(phen_file, qcovar_file, covar_file, mphen, MaxIter, … in option()
1118 …pter_gcta->fit_bivar_reml(grm_file, phen_file, qcovar_file, covar_file, kp_indi_file, rm_indi_file… in option()
1120 …pter_gcta->fit_reml(grm_file, phen_file, qcovar_file, covar_file, qgxe_file, gxe_file, kp_indi_fil… in option()
H A Dgcta.h109 …void fit_reml(string grm_file, string phen_file, string qcovar_file, string covar_file, string qGE…
120 …void fit_bivar_reml(string grm_file, string phen_file, string qcovar_file, string covar_file, stri…
157 …e, bool m_grm_flag, string subtract_grm_file, string phen_file, string qcovar_file, string covar_f…
158 …void mlma_loco(string phen_file, string qcovar_file, string covar_file, int mphen, int MaxIter, ve…
H A Dbivar_reml.cpp15 void gcta::fit_bivar_reml(string grm_file, string phen_file, string qcovar_file, string covar_file,… in fit_bivar_reml() argument
24 bool qcovar_flag = (!qcovar_file.empty()); in fit_bivar_reml()
49 qcovar_num = read_covar(qcovar_file, qcovar_ID, qcovar, true); in fit_bivar_reml()
H A Dest_hsq.cpp171 void gcta::fit_reml(string grm_file, string phen_file, string qcovar_file, string covar_file, strin… in fit_reml() argument
178 bool qcovar_flag = (!qcovar_file.empty()); in fit_reml()
205 qcovar_num = read_covar(qcovar_file, qcovar_ID, qcovar, true); in fit_reml()