Searched refs:qcutoff (Results 1 – 7 of 7) sorted by relevance
/dports/biology/bbmap/bbmap/current/align2/ |
H A D | BBIndex.java | 1293 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT)); 1374 if(qscore<qcutoff){ 1446 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT)); 1451 qcutoff=Tools.max(qcutoff, (int)(qscore*DYNAMIC_QSCORE_THRESH)); 1684 bestScores[2]=Tools.max(bestScores[2], qcutoff); 1704 bestScores[2]=Tools.max(bestScores[2], qcutoff); 1784 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT)); in camelWalk3() 1968 if(qscore<qcutoff){ in camelWalk3() 2044 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT)); in camelWalk3() 2049 qcutoff=Tools.max(qcutoff, (int)(qscore*DYNAMIC_QSCORE_THRESH)); in camelWalk3() [all …]
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H A D | BBIndex5.java | 1290 int qcutoff=Tools.max(bestScores[2], minQuickScore); 1305 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT)); 1373 …? quickScore(values, keyScores, centerIndex, offsets, sizes, true, approxHits, numHits) : qcutoff); 1384 if(qscore<qcutoff){ 1455 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT)); 1460 qcutoff=Tools.max(qcutoff, (int)(qscore*DYNAMIC_QSCORE_THRESH)); 1681 bestScores[2]=Tools.max(bestScores[2], qcutoff); 1701 bestScores[2]=Tools.max(bestScores[2], qcutoff);
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H A D | BBIndexPacBio.java | 1274 int qcutoff=Tools.max(bestScores[2], minQuickScore); 1286 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT)); 1358 …? quickScore(values, keyScores, centerIndex, offsets, sizes, true, approxHits, numHits) : qcutoff); 1369 if(qscore<qcutoff){ 1434 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT)); 1439 qcutoff=Tools.max(qcutoff, (int)(qscore*DYNAMIC_QSCORE_THRESH)); 1645 bestScores[2]=Tools.max(bestScores[2], qcutoff); 1665 bestScores[2]=Tools.max(bestScores[2], qcutoff);
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H A D | BBIndexAcc.java | 1358 int qcutoff=Tools.max(bestScores[2], minQuickScore); 1373 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT)); 1441 …? quickScore(values, keyScores, centerIndex, offsets, sizes, true, approxHits, numHits) : qcutoff); 1452 if(qscore<qcutoff){ 1467 ", qscore="+qscore+", qcutoff="+qcutoff+", filter_by_qscore="+filter_by_qscore); 1524 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT)); 1529 qcutoff=Tools.max(qcutoff, (int)(qscore*DYNAMIC_QSCORE_THRESH)); 1762 bestScores[2]=Tools.max(bestScores[2], qcutoff); 1782 bestScores[2]=Tools.max(bestScores[2], qcutoff);
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H A D | BBIndexPacBioSkimmer.java | 947 int qcutoff=Tools.max(bestScores[2], minQuickScore); 1028 …? quickScore(values, keyScores, centerIndex, offsets, sizes, true, approxHits, numHits) : qcutoff); 1039 if(qscore<qcutoff){ 1106 qcutoff=calcQScoreCutoff(maxQuickScore, qscore, qcutoff); 1308 bestScores[2]=Tools.max(bestScores[2], qcutoff); 1328 bestScores[2]=Tools.max(bestScores[2], qcutoff);
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/dports/science/shelxle/shelxle-1.0.1352/ |
H A D | chgl.h | 336 double qcutoff,pickradius; variable
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H A D | chgl.cpp | 321 qcutoff=-9; in ChGL() 2873 if (hideReason&HIDE_REASON_QPEAK) if (mol->showatoms[i].an==-1) {if (qcutoff>0) in rehide() 2874 …showatoms[i].hidden=((mol->showatoms[i].peakHeight>0)&&(mol->showatoms[i].peakHeight<qcutoff))?1:0; in rehide() 2875 …howatoms[i].hidden=((mol->showatoms[i].peakHeight<0)&&(mol->showatoms[i].peakHeight>qcutoff))?1:0;} in rehide() 3157 qcutoff=cutoff; in hideQPeaksBelow()
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