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Searched refs:qcutoff (Results 1 – 7 of 7) sorted by relevance

/dports/biology/bbmap/bbmap/current/align2/
H A DBBIndex.java1293 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT));
1374 if(qscore<qcutoff){
1446 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT));
1451 qcutoff=Tools.max(qcutoff, (int)(qscore*DYNAMIC_QSCORE_THRESH));
1684 bestScores[2]=Tools.max(bestScores[2], qcutoff);
1704 bestScores[2]=Tools.max(bestScores[2], qcutoff);
1784 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT)); in camelWalk3()
1968 if(qscore<qcutoff){ in camelWalk3()
2044 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT)); in camelWalk3()
2049 qcutoff=Tools.max(qcutoff, (int)(qscore*DYNAMIC_QSCORE_THRESH)); in camelWalk3()
[all …]
H A DBBIndex5.java1290 int qcutoff=Tools.max(bestScores[2], minQuickScore);
1305 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT));
1373 …? quickScore(values, keyScores, centerIndex, offsets, sizes, true, approxHits, numHits) : qcutoff);
1384 if(qscore<qcutoff){
1455 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT));
1460 qcutoff=Tools.max(qcutoff, (int)(qscore*DYNAMIC_QSCORE_THRESH));
1681 bestScores[2]=Tools.max(bestScores[2], qcutoff);
1701 bestScores[2]=Tools.max(bestScores[2], qcutoff);
H A DBBIndexPacBio.java1274 int qcutoff=Tools.max(bestScores[2], minQuickScore);
1286 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT));
1358 …? quickScore(values, keyScores, centerIndex, offsets, sizes, true, approxHits, numHits) : qcutoff);
1369 if(qscore<qcutoff){
1434 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT));
1439 qcutoff=Tools.max(qcutoff, (int)(qscore*DYNAMIC_QSCORE_THRESH));
1645 bestScores[2]=Tools.max(bestScores[2], qcutoff);
1665 bestScores[2]=Tools.max(bestScores[2], qcutoff);
H A DBBIndexAcc.java1358 int qcutoff=Tools.max(bestScores[2], minQuickScore);
1373 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT));
1441 …? quickScore(values, keyScores, centerIndex, offsets, sizes, true, approxHits, numHits) : qcutoff);
1452 if(qscore<qcutoff){
1467 ", qscore="+qscore+", qcutoff="+qcutoff+", filter_by_qscore="+filter_by_qscore);
1524 qcutoff=Tools.max(qcutoff, (int)(maxQuickScore*DYNAMIC_QSCORE_THRESH_PERFECT));
1529 qcutoff=Tools.max(qcutoff, (int)(qscore*DYNAMIC_QSCORE_THRESH));
1762 bestScores[2]=Tools.max(bestScores[2], qcutoff);
1782 bestScores[2]=Tools.max(bestScores[2], qcutoff);
H A DBBIndexPacBioSkimmer.java947 int qcutoff=Tools.max(bestScores[2], minQuickScore);
1028 …? quickScore(values, keyScores, centerIndex, offsets, sizes, true, approxHits, numHits) : qcutoff);
1039 if(qscore<qcutoff){
1106 qcutoff=calcQScoreCutoff(maxQuickScore, qscore, qcutoff);
1308 bestScores[2]=Tools.max(bestScores[2], qcutoff);
1328 bestScores[2]=Tools.max(bestScores[2], qcutoff);
/dports/science/shelxle/shelxle-1.0.1352/
H A Dchgl.h336 double qcutoff,pickradius; variable
H A Dchgl.cpp321 qcutoff=-9; in ChGL()
2873 if (hideReason&HIDE_REASON_QPEAK) if (mol->showatoms[i].an==-1) {if (qcutoff>0) in rehide()
2874 …showatoms[i].hidden=((mol->showatoms[i].peakHeight>0)&&(mol->showatoms[i].peakHeight<qcutoff))?1:0; in rehide()
2875 …howatoms[i].hidden=((mol->showatoms[i].peakHeight<0)&&(mol->showatoms[i].peakHeight>qcutoff))?1:0;} in rehide()
3157 qcutoff=cutoff; in hideQPeaksBelow()