/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/oligofar/ |
H A D | daligner.hpp | 12 virtual void Align( CSeqCoding::ECoding qc, const char * q, int qlen, \ 32 void AlignC( const char * q, int qlen, const char * s, int slen, int flags ); \ 34 void AlignQ( const char * q, int qlen, const char * s, int slen, int flags ); \ 36 void AlignQS( const char * q, int qlen, const char * s, int slen, int flags ); \ 42 inline void CAligner_ ## ALGO::Align( CSeqCoding::ECoding qc, const char * q, int qlen, \ 45 if( qlen > 0 ) { \ 68 AlignQS<CQuery,TSbjNcbi8naRefFwd>( q, qlen, s, slen, flags ); \ 70 AlignQS<CQuery,TSbjNcbi8naRefRev>( q, qlen, s, slen, flags ); \ 77 AlignQS<CQuery,TSbjNcbi8naRefFwd>( q, qlen, s, slen, flags ); \ 79 AlignQS<CQuery,TSbjNcbi8naRefRev>( q, qlen, s, slen, flags ); \ [all …]
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/dports/net/libunp/unpv12e/debug/ |
H A D | qlen.c | 50 int qlen, j, k, junk, fd[MAXBACKLOG + 1]; in do_parent() local 56 for (qlen = 0; qlen <= 14; qlen++) { in do_parent() 57 printf("qlen = %d: ", qlen); in do_parent() 58 Write(pfd, &qlen, sizeof(int)); /* tell child value */ in do_parent() 85 qlen = -1; /* tell child we're all done */ in do_parent() 86 Write(pfd, &qlen, sizeof(int)); in do_parent() 92 int listenfd, qlen, junk; in do_child() local 97 Read(cfd, &qlen, sizeof(int)); /* wait for parent */ in do_child() 98 while (qlen >= 0) { in do_child() 104 tbind.qlen = qlen; in do_child() [all …]
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/dports/games/retroarch/RetroArch-1.9.7/deps/bearssl-0.6/src/rsa/ |
H A D | rsa_i15_modulus.c | 34 size_t nlen, plen, qlen, tlen; in br_rsa_i15_compute_modulus() local 46 qlen = sk->qlen; in br_rsa_i15_compute_modulus() 47 while (qlen > 0 && *qbuf == 0) { in br_rsa_i15_compute_modulus() 49 qlen --; in br_rsa_i15_compute_modulus() 70 if ((15 * tlen) < (qlen << 3) + 15) { in br_rsa_i15_compute_modulus() 73 br_i15_decode(t, qbuf, qlen); in br_rsa_i15_compute_modulus() 75 qlen = (q[0] + 31) >> 4; in br_rsa_i15_compute_modulus() 76 t += qlen; in br_rsa_i15_compute_modulus() 77 tlen -= qlen; in br_rsa_i15_compute_modulus() 83 if (tlen < (plen + qlen + 1)) { in br_rsa_i15_compute_modulus()
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H A D | rsa_i31_modulus.c | 34 size_t nlen, plen, qlen, tlen; in br_rsa_i31_compute_modulus() local 46 qlen = sk->qlen; in br_rsa_i31_compute_modulus() 47 while (qlen > 0 && *qbuf == 0) { in br_rsa_i31_compute_modulus() 49 qlen --; in br_rsa_i31_compute_modulus() 70 if ((31 * tlen) < (qlen << 3) + 31) { in br_rsa_i31_compute_modulus() 73 br_i31_decode(t, qbuf, qlen); in br_rsa_i31_compute_modulus() 75 qlen = (q[0] + 63) >> 5; in br_rsa_i31_compute_modulus() 76 t += qlen; in br_rsa_i31_compute_modulus() 77 tlen -= qlen; in br_rsa_i31_compute_modulus() 83 if (tlen < (plen + qlen + 1)) { in br_rsa_i31_compute_modulus()
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H A D | rsa_i31_privexp.c | 64 size_t plen, qlen, u, len, dlen; in br_rsa_i31_compute_privexp() local 90 qlen = sk->qlen; in br_rsa_i31_compute_privexp() 91 while (qlen > 0 && *qbuf == 0) { in br_rsa_i31_compute_privexp() 93 qlen --; in br_rsa_i31_compute_privexp() 95 if (qlen < 5 || qlen > (BR_MAX_RSA_FACTOR / 8) in br_rsa_i31_compute_privexp() 96 || (qbuf[qlen - 1] & 1) != 1) in br_rsa_i31_compute_privexp() 113 br_i31_decode(q, qbuf, qlen); in br_rsa_i31_compute_privexp() 114 qlen = (q[0] + 31) >> 5; in br_rsa_i31_compute_privexp() 125 phi = q + 1 + qlen; in br_rsa_i31_compute_privexp()
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/dports/security/bearssl/bearssl-0.6/src/rsa/ |
H A D | rsa_i15_modulus.c | 34 size_t nlen, plen, qlen, tlen; in br_rsa_i15_compute_modulus() local 46 qlen = sk->qlen; in br_rsa_i15_compute_modulus() 47 while (qlen > 0 && *qbuf == 0) { in br_rsa_i15_compute_modulus() 49 qlen --; in br_rsa_i15_compute_modulus() 70 if ((15 * tlen) < (qlen << 3) + 15) { in br_rsa_i15_compute_modulus() 73 br_i15_decode(t, qbuf, qlen); in br_rsa_i15_compute_modulus() 75 qlen = (q[0] + 31) >> 4; in br_rsa_i15_compute_modulus() 76 t += qlen; in br_rsa_i15_compute_modulus() 77 tlen -= qlen; in br_rsa_i15_compute_modulus() 83 if (tlen < (plen + qlen + 1)) { in br_rsa_i15_compute_modulus()
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H A D | rsa_i31_modulus.c | 34 size_t nlen, plen, qlen, tlen; in br_rsa_i31_compute_modulus() local 46 qlen = sk->qlen; in br_rsa_i31_compute_modulus() 47 while (qlen > 0 && *qbuf == 0) { in br_rsa_i31_compute_modulus() 49 qlen --; in br_rsa_i31_compute_modulus() 70 if ((31 * tlen) < (qlen << 3) + 31) { in br_rsa_i31_compute_modulus() 73 br_i31_decode(t, qbuf, qlen); in br_rsa_i31_compute_modulus() 75 qlen = (q[0] + 63) >> 5; in br_rsa_i31_compute_modulus() 76 t += qlen; in br_rsa_i31_compute_modulus() 77 tlen -= qlen; in br_rsa_i31_compute_modulus() 83 if (tlen < (plen + qlen + 1)) { in br_rsa_i31_compute_modulus()
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/dports/misc/rump/buildrump.sh-b914579/src/sys/dev/raidframe/ |
H A D | rf_sstf.c | 56 #define QSUM(_sstfq_) (((_sstfq_)->lopri.qlen)+((_sstfq_)->left.qlen)+((_sstfq_)->right.qlen)) 123 (_q_)->qlen--; \ 140 (_q_)->qlen--; \ 297 sstfq->left.qlen, sstfq->right.qlen, in rf_SstfEnqueue() 302 sstfq->lopri.qlen++; in rf_SstfEnqueue() 306 sstfq->left.qlen++; in rf_SstfEnqueue() 335 queue->qlen--; in do_dequeue() 357 sstfq->left.qlen, sstfq->right.qlen, sstfq->lopri.qlen); in rf_SstfDequeue() 421 scanq->left.qlen, scanq->right.qlen, scanq->lopri.qlen); in rf_ScanDequeue() 477 cscanq->left.qlen, cscanq->right.qlen, in rf_CscanDequeue() [all …]
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/dports/mail/vpopmail/vpopmail-5.4.33/vusaged/ |
H A D | packet.c | 47 uint16_t qlen = 0; in packet_read() local 60 memcpy(&qlen, g->data, sizeof(uint16_t)); in packet_read() 62 qlen = ntohs(qlen); in packet_read() 64 if (qlen == 0) { in packet_read() 79 if (qlen > PACKET_MAX_QUERY_SIZE) { in packet_read() 80 fprintf(stderr, "packet_read: received large query: %d\n", qlen); in packet_read() 88 if (g->bytes < (qlen + sizeof(uint16_t))) { in packet_read() 103 ret = query_parse(handle, (g->data + sizeof(uint16_t)), qlen); in packet_read() 113 ret = grow_cut(g, qlen + sizeof(uint16_t)); in packet_read()
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/dports/dns/ares/ares-1.1.1/ |
H A D | ares_send.c | 28 void ares_send(ares_channel channel, const unsigned char *qbuf, int qlen, in ares_send() argument 36 if (qlen < HFIXEDSZ || qlen >= (1 << 16)) in ares_send() 49 query->tcpbuf = malloc(qlen + 2); in ares_send() 72 query->tcpbuf[0] = (qlen >> 8) & 0xff; in ares_send() 73 query->tcpbuf[1] = qlen & 0xff; in ares_send() 74 memcpy(query->tcpbuf + 2, qbuf, qlen); in ares_send() 75 query->tcplen = qlen + 2; in ares_send() 79 query->qlen = qlen; in ares_send() 88 query->using_tcp = (channel->flags & ARES_FLAG_USEVC) || qlen > PACKETSZ; in ares_send()
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/dports/biology/bbmap/bbmap/current/icecream/ |
H A D | IceCreamAlignerJNI.java | 29 final int qlen=query.length; in alignForward() local 36 if((qlen+rlen+32)*2>Short.MAX_VALUE) { in alignForward() 84 final int qlen=query.length; in alignForwardShort() local 88 if((qlen+rlen+32)*2>Short.MAX_VALUE) { in alignForwardShort() 95 alignForwardShortJNI(qInt, rInt, retVec, qlen, rlen); in alignForwardShort() 143 for(int i=0; i<=arrayLength-qlen; i++){prev[i]=0;} in alignForwardPseudo() 149 for(int qpos=0; qpos<qlen; qpos++){ in alignForwardPseudo() 154 final int remainingBases=(qlen-qpos); in alignForwardPseudo() 210 maxQpos=qlen; in alignForwardPseudo() 222 final int arrayLength=qlen; in alignForwardShortPseudo() [all …]
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/dports/biology/bowtie/bowtie-1.3.1/ |
H A D | ref_aligner.h | 199 assert_gt(qlen, 0); in naiveFind() 287 assert_gt(qlen, 0); in anchor64Find() 296 const TIndexOffU anchorOverhang = qlen <= 32 ? 0 : qlen - 32; in anchor64Find() 530 assert_gt(qlen, 0); in naiveFind() 628 assert_gt(qlen, 0); in naiveFind() 639 const size_t anchorOverhang = (qlen <= 32 ? 0 : (qlen - 32)); in naiveFind() 931 assert_gt(qlen, 0); in naiveFind() 1988 qend -= qlen; in naiveFind() 1991 qbegin += qlen; in naiveFind() 2180 qend -= qlen; in naiveFind() [all …]
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/dports/security/p5-Crypt-Perl/Crypt-Perl-0.34/lib/Crypt/Perl/ECDSA/ |
H A D | Deterministic.pm | 25 our $qlen; 38 local $qlen = length $order->to_bin(); 39 local $qlen_bytelen = Crypt::Perl::Math::ceil( $qlen / 8 ); 82 last if length(_bytes_to_bitstxt($T)) >= $qlen; 87 $k = bits2int($T, $qlen); 111 my ($bits, $qlen) = @_; 116 if ($qlen < $blen) { 117 substr($bits, -($blen - $qlen)) = q<>; 138 my $z1 = bits2int($bits, $qlen); 142 return int2octets($z2, $qlen);
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/dports/dns/py-pycares/pycares-3.1.1/deps/c-ares/src/ |
H A D | ares_send.c | 35 void ares_send(ares_channel channel, const unsigned char *qbuf, int qlen, in ares_send() argument 43 if (qlen < HFIXEDSZ || qlen >= (1 << 16)) in ares_send() 56 query->tcpbuf = ares_malloc(qlen + 2); in ares_send() 87 query->tcpbuf[0] = (unsigned char)((qlen >> 8) & 0xff); in ares_send() 88 query->tcpbuf[1] = (unsigned char)(qlen & 0xff); in ares_send() 89 memcpy(query->tcpbuf + 2, qbuf, qlen); in ares_send() 90 query->tcplen = qlen + 2; in ares_send() 94 query->qlen = qlen; in ares_send() 114 query->using_tcp = (channel->flags & ARES_FLAG_USEVC) || qlen > packetsz; in ares_send()
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/dports/dns/c-ares/c-ares-1.17.2/src/lib/ |
H A D | ares_send.c | 29 void ares_send(ares_channel channel, const unsigned char *qbuf, int qlen, in ares_send() argument 37 if (qlen < HFIXEDSZ || qlen >= (1 << 16)) in ares_send() 50 query->tcpbuf = ares_malloc(qlen + 2); in ares_send() 81 query->tcpbuf[0] = (unsigned char)((qlen >> 8) & 0xff); in ares_send() 82 query->tcpbuf[1] = (unsigned char)(qlen & 0xff); in ares_send() 83 memcpy(query->tcpbuf + 2, qbuf, qlen); in ares_send() 84 query->tcplen = qlen + 2; in ares_send() 88 query->qlen = qlen; in ares_send() 108 query->using_tcp = (channel->flags & ARES_FLAG_USEVC) || qlen > packetsz; in ares_send()
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/dports/sysutils/fluent-bit/fluent-bit-1.8.11/lib/c-ares-809d5e84/src/lib/ |
H A D | ares_send.c | 29 void ares_send(ares_channel channel, const unsigned char *qbuf, int qlen, in ares_send() argument 37 if (qlen < HFIXEDSZ || qlen >= (1 << 16)) in ares_send() 50 query->tcpbuf = ares_malloc(qlen + 2); in ares_send() 81 query->tcpbuf[0] = (unsigned char)((qlen >> 8) & 0xff); in ares_send() 82 query->tcpbuf[1] = (unsigned char)(qlen & 0xff); in ares_send() 83 memcpy(query->tcpbuf + 2, qbuf, qlen); in ares_send() 84 query->tcplen = qlen + 2; in ares_send() 88 query->qlen = qlen; in ares_send() 108 query->using_tcp = (channel->flags & ARES_FLAG_USEVC) || qlen > packetsz; in ares_send()
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/dports/www/node10/node-v10.24.1/deps/cares/src/ |
H A D | ares_send.c | 35 void ares_send(ares_channel channel, const unsigned char *qbuf, int qlen, in ares_send() argument 43 if (qlen < HFIXEDSZ || qlen >= (1 << 16)) in ares_send() 56 query->tcpbuf = ares_malloc(qlen + 2); in ares_send() 87 query->tcpbuf[0] = (unsigned char)((qlen >> 8) & 0xff); in ares_send() 88 query->tcpbuf[1] = (unsigned char)(qlen & 0xff); in ares_send() 89 memcpy(query->tcpbuf + 2, qbuf, qlen); in ares_send() 90 query->tcplen = qlen + 2; in ares_send() 94 query->qlen = qlen; in ares_send() 114 query->using_tcp = (channel->flags & ARES_FLAG_USEVC) || qlen > packetsz; in ares_send()
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/dports/devel/py-grpcio/grpcio-1.43.0/third_party/cares/cares/ |
H A D | ares_send.c | 35 void ares_send(ares_channel channel, const unsigned char *qbuf, int qlen, in ares_send() argument 43 if (qlen < HFIXEDSZ || qlen >= (1 << 16)) in ares_send() 56 query->tcpbuf = ares_malloc(qlen + 2); in ares_send() 87 query->tcpbuf[0] = (unsigned char)((qlen >> 8) & 0xff); in ares_send() 88 query->tcpbuf[1] = (unsigned char)(qlen & 0xff); in ares_send() 89 memcpy(query->tcpbuf + 2, qbuf, qlen); in ares_send() 90 query->tcplen = qlen + 2; in ares_send() 94 query->qlen = qlen; in ares_send() 114 query->using_tcp = (channel->flags & ARES_FLAG_USEVC) || qlen > packetsz; in ares_send()
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/dports/biology/canu/canu-2.2/src/utility/src/utility/ |
H A D | align-ksw2-extz.C | 16 if (w < 0) w = tlen > qlen? tlen : qlen; in ksw_extz() 17 n_col = qlen < 2*w+1? qlen : 2*w+1; // maximum #columns of the backtrack matrix in ksw_extz() 18 qp = (int8_t*)kmalloc(km, qlen * m); in ksw_extz() 19 eh = (eh_t*)kcalloc(km, qlen + 1, 8); in ksw_extz() 33 for (j = 1; j <= qlen && j <= w; ++j) in ksw_extz() 40 int8_t *q = &qp[target[i] * qlen]; in ksw_extz() 42 en = i + w < qlen - 1? i + w : qlen - 1; in ksw_extz() 118 if (en == qlen - 1 && eh[qlen].h > ez->mqe) in ksw_extz() 119 ez->mqe = eh[qlen].h, ez->mqe_t = i; in ksw_extz() 123 if (i == tlen - 1 && en == qlen - 1) in ksw_extz() [all …]
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/dports/biology/bbmap/bbmap/jni/ |
H A D | IceCreamAlignerJNI.c | 37 for(int qpos=0; qpos<qlen; qpos++){ in alignForwardJNI() 42 const int remainingBases=(qlen-qpos); in alignForwardJNI() 84 maxQpos=qlen; in alignForwardJNI() 122 for(jshort qpos=0; qpos<qlen; qpos++){ in alignForward16JNI() 127 const jshort remainingBases=(qlen-qpos); in alignForward16JNI() 183 maxQpos=qlen; in alignForward16JNI() 196 const jint arrayLength=qlen; in alignForwardShortJNI() 197 const jint arrayLength2=qlen+1; in alignForwardShortJNI() 284 const jshort arrayLength=qlen; in alignForwardShort16JNI() 285 const jshort arrayLength2=qlen+1; in alignForwardShort16JNI() [all …]
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/dports/biology/vsearch/vsearch-2.17.1/src/ |
H A D | align.cc | 212 int64_t qlen = qend - qseq; in nw_align() local 215 if (qlen * dlen > nw->dir_alloc) in nw_align() 217 nw->dir_alloc = qlen * dlen; in nw_align() 232 for(i=0; i<qlen; i++) in nw_align() 235 if (i < qlen-1) { in nw_align() 267 for(i=0; i<qlen; i++) in nw_align() 269 char * d = nw->dir + qlen*j+i; in nw_align() 289 if (i < qlen-1) in nw_align() 342 char * cigarend = cigar+qlen+dlen+1; in nw_align() 348 i = qlen; in nw_align() [all …]
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/dports/biology/minimap2/minimap2-2.24/ |
H A D | ksw2_dispatch.c | 61 ksw_extz2_sse41(km, qlen, query, tlen, target, m, mat, q, e, w, zdrop, end_bonus, flag, ez); in ksw_extz2_sse() 63 ksw_extz2_sse2(km, qlen, query, tlen, target, m, mat, q, e, w, zdrop, end_bonus, flag, ez); in ksw_extz2_sse() 67 void ksw_extd2_sse(void *km, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int8_… in ksw_extd2_sse() argument 70 …extern void ksw_extd2_sse2(void *km, int qlen, const uint8_t *query, int tlen, const uint8_t *targ… in ksw_extd2_sse() 72 …extern void ksw_extd2_sse41(void *km, int qlen, const uint8_t *query, int tlen, const uint8_t *tar… in ksw_extd2_sse() 76 …ksw_extd2_sse41(km, qlen, query, tlen, target, m, mat, q, e, q2, e2, w, zdrop, end_bonus, flag, ez… in ksw_extd2_sse() 78 …ksw_extd2_sse2(km, qlen, query, tlen, target, m, mat, q, e, q2, e2, w, zdrop, end_bonus, flag, ez); in ksw_extd2_sse() 82 void ksw_exts2_sse(void *km, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int8_… in ksw_exts2_sse() argument 85 …extern void ksw_exts2_sse2(void *km, int qlen, const uint8_t *query, int tlen, const uint8_t *targ… in ksw_exts2_sse() 91 …ksw_exts2_sse41(km, qlen, query, tlen, target, m, mat, q, e, q2, noncan, zdrop, junc_bonus, flag, … in ksw_exts2_sse() [all …]
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/dports/net/cjdns/cjdns-cjdns-v21.1/node_build/dependencies/cnacl/crypto_scalarmult/ |
H A D | try.c | 17 #define qlen crypto_scalarmult_BYTES macro 41 q = alignedcalloc(qlen); in allocate() 46 q2 = alignedcalloc(qlen + crypto_scalarmult_BYTES); in allocate() 71 for (i = 0;i < qlen;++i) q[i] = i + 3; in checksum_compute() 91 for (i = qlen;i < qlen + 16;++i) q[i] = random(); in checksum_compute() 94 for (i = -16;i < qlen + 16;++i) q2[i] = q[i]; in checksum_compute() 103 …for (i = qlen;i < qlen + 16;++i) if (q2[i] != q[i]) return "crypto_scalarmult writes after output"; in checksum_compute() 106 … for (i = 0;i < qlen;++i) if (q[i] != m2[i]) return "crypto_scalarmult does not handle n overlap"; in checksum_compute() 107 for (i = 0;i < qlen;++i) m2[i] = m[i]; in checksum_compute() 110 … for (i = 0;i < qlen;++i) if (q[i] != p2[i]) return "crypto_scalarmult does not handle p overlap"; in checksum_compute() [all …]
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/dports/multimedia/v4l_compat/linux-5.13-rc2/sound/core/seq/oss/ |
H A D | seq_oss_readq.c | 48 q->qlen = 0; in snd_seq_oss_readq_new() 76 if (q->qlen) { in snd_seq_oss_readq_clear() 77 q->qlen = 0; in snd_seq_oss_readq_clear() 146 if (q->qlen >= q->maxlen - 1) { in snd_seq_oss_readq_put_event() 153 q->qlen++; in snd_seq_oss_readq_put_event() 171 if (q->qlen == 0) in snd_seq_oss_readq_pick() 184 (q->qlen > 0 || q->head == q->tail), in snd_seq_oss_readq_wait() 195 if (q->qlen > 0) { in snd_seq_oss_readq_free() 197 q->qlen--; in snd_seq_oss_readq_free() 209 return q->qlen; in snd_seq_oss_readq_poll() [all …]
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/dports/multimedia/libv4l/linux-5.13-rc2/sound/core/seq/oss/ |
H A D | seq_oss_readq.c | 48 q->qlen = 0; in snd_seq_oss_readq_new() 76 if (q->qlen) { in snd_seq_oss_readq_clear() 77 q->qlen = 0; in snd_seq_oss_readq_clear() 146 if (q->qlen >= q->maxlen - 1) { in snd_seq_oss_readq_put_event() 153 q->qlen++; in snd_seq_oss_readq_put_event() 171 if (q->qlen == 0) in snd_seq_oss_readq_pick() 184 (q->qlen > 0 || q->head == q->tail), in snd_seq_oss_readq_wait() 195 if (q->qlen > 0) { in snd_seq_oss_readq_free() 197 q->qlen--; in snd_seq_oss_readq_free() 209 return q->qlen; in snd_seq_oss_readq_poll() [all …]
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