Searched refs:qlfact (Results 1 – 14 of 14) sorted by relevance
| /dports/biology/fasta3/fasta-36.3.8/src/ |
| H A D | c_dispn.c | 70 int llsgn, llfact, qlsgn, qlfact, qfx0, qfxn, lfx0, lfxn; in discons() local
85 if (aln->qlfact == 0) {qlfact = 1;} in discons()
86 else qlfact = aln->qlfact; in discons()
293 (long)qlsgn*qlfact*(ioff0-del0-ioff00) + qf_flag; in discons()
320 (long)qlsgn*qlfact*(ioff0-del0-ioff00); in discons()
388 q_end = qqoff + qf_flag + (aln->qlfact-1)*(aln->qlrev > 0 ? -1 : 1); in discons()
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| H A D | aln_structs.h | 17 int qlrev, qlfact; member
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| H A D | dropnsw.c | 419 aln->llfact = aln->llmult = aln->qlfact = 1; in aln_func_vals()
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| H A D | dropff2.c | 1366 aln->qlfact = 1; in aln_func_vals()
1371 aln->llfact = aln->qlfact = aln->llmult = 1; in aln_func_vals()
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| H A D | dropnnw2.c | 895 aln->llfact = aln->llmult = aln->qlfact = 1; in aln_func_vals()
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| H A D | dropfs2.c | 1641 aln->qlfact= 1;
1647 aln->llfact = aln->llmult = aln->qlfact = 1;
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| H A D | dropgsw2.c | 1094 aln->llfact = aln->llmult = aln->qlfact = 1; in aln_func_vals()
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| H A D | dropnfa.c | 2232 aln->qlfact = 1; in aln_func_vals()
2243 aln->llfact = aln->qlfact = aln->llmult = 1; in aln_func_vals()
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| H A D | dropfx2.c | 2679 aln->qlfact = 3;
2685 aln->qlfact = 1;
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| H A D | dropfz3.c | 2719 aln->qlfact = 3;
2725 aln->qlfact = 1;
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| H A D | dropfx.c | 2677 aln->qlfact = 3;
2683 aln->qlfact = 1;
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| H A D | dropfz2.c | 2719 aln->qlfact = 3;
2725 aln->qlfact = 1;
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| /dports/biology/fasta/fasta/ |
| H A D | ndispn.c | 248 int llsgn, llfact, qlsgn, qlfact, qfx0, qfxn, lfx0, lfxn; in cal_coord() local
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| /dports/biology/fasta3/fasta-36.3.8/doc/ |
| H A D | readme.v34t0 | 260 called to set llfact, qlfact, etc in a_struct aln before or after
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