Searched refs:qrynode (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/mummer/mummer-4.0.0beta2-2-g277dac5/src/tigr/ |
| H A D | show-snps.cc | 80 int j = a->ep->qrynode->id->compare (*(b->ep->qrynode->id)); in operator ()()
103 int i = a->ep->qrynode->id->compare (*(b->ep->qrynode->id)); in operator ()()
359 char * Q[] = {(*ei)->qrynode->seq, NULL, NULL, NULL, NULL, NULL, NULL}; in FindSNPs()
363 long lenQ = (*ei) -> qrynode -> len; in FindSNPs()
391 ss << *((*ei)->refnode->id) << ' ' << *((*ei)->qrynode->id); in FindSNPs()
755 (*si)->pQ : (*si)->ep->qrynode->len - (*si)->pQ + 1; in PrintHuman()
765 (*si)->ep->refnode->len, (*si)->ep->qrynode->len); in PrintHuman()
778 (*si)->ep->qrynode->id->c_str( )); in PrintHuman()
815 (*si)->pQ : (*si)->ep->qrynode->len - (*si)->pQ + 1; in PrintTabular()
825 (*si)->ep->refnode->len, (*si)->ep->qrynode->len); in PrintTabular()
[all …]
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| H A D | show-diff.cc | 47 if ( i->edge->qrynode < j->edge->qrynode ) in operator ()()
49 else if ( i->edge->qrynode > j->edge->qrynode ) in operator ()()
233 PGA->edge->qrynode->id->c_str(), in PrintDiff()
234 A->edge->qrynode->id->c_str(), in PrintDiff()
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| H A D | delta.cc | 435 dep->qrynode = &((insret.first)->second); in build()
440 dep->qrynode->id = &((insret.first)->first); in build()
441 dep->qrynode->len = dr.getRecord().lenQ; in build()
448 dep->qrynode->edges.push_back (dep); in build()
748 (*eli)->loQ = RevC ((*eli)->loQ, (*ei)->qrynode->len); in flagGLIS()
749 (*eli)->hiQ = RevC ((*eli)->hiQ, (*ei)->qrynode->len); in flagGLIS()
844 (*eli)->loQ = RevC ((*eli)->loQ, (*ei)->qrynode->len); in flagGLIS()
845 (*eli)->hiQ = RevC ((*eli)->hiQ, (*ei)->qrynode->len); in flagGLIS()
1364 << *((*ei)->qrynode->id) << ' ' in outputDelta()
1366 << (*ei)->qrynode->len << '\n'; in outputDelta()
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| /dports/biology/mummer/mummer-4.0.0beta2-2-g277dac5/include/mummer/ |
| H A D | delta.hh | 426 DeltaNode_t * qrynode; //!< the adjacent query node member
430 { refnode = qrynode = NULL; } in DeltaEdge_t()
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