| /dports/biology/pbbam/pbbam-0.18.0/src/ |
| H A D | FastqReader.cpp | 36 if (name_.empty() && bases_.empty() && quals_.empty()) return false; in GetNext()
37 record = FastqSequence{name_, bases_, quals_}; in GetNext()
47 quals_.clear(); in FetchNext()
72 void ReadQuals() { std::getline(stream_, quals_, '\n'); } in ReadQuals()
78 std::string quals_; member
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| /dports/biology/hisat2/hisat2-2.2.1/ |
| H A D | pat.cpp | 464 quals_()
538 quals_.push_back(BTString(vq));
545 assert_eq(v_.size(), quals_.size());
571 r.qual = quals_[cur_];
621 ra.qual = quals_[cur_];
626 rb.qual = quals_[cur_];
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| H A D | pat.h | 748 EList<BTString> quals_; // forward qualities variable
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| /dports/devel/aarch64-none-elf-gcc/gcc-8.4.0/gcc/testsuite/g++.dg/tree-ssa/ |
| H A D | pr78687.C | 436 , quals_(quals)
446 int quals_;
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| /dports/lang/gcc9/gcc-9.4.0/gcc/testsuite/g++.dg/tree-ssa/ |
| H A D | pr78687.C | 436 , quals_(quals)
446 int quals_;
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| /dports/devel/riscv64-gcc/gcc-8.3.0/gcc/testsuite/g++.dg/tree-ssa/ |
| H A D | pr78687.C | 436 , quals_(quals)
446 int quals_;
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| /dports/devel/avr-gcc/gcc-10.2.0/gcc/testsuite/g++.dg/tree-ssa/ |
| H A D | pr78687.C | 436 , quals_(quals)
446 int quals_;
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| /dports/lang/gcc11/gcc-11.2.0/gcc/testsuite/g++.dg/tree-ssa/ |
| H A D | pr78687.C | 436 , quals_(quals)
446 int quals_;
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| /dports/devel/arm-none-eabi-gcc/gcc-8.4.0/gcc/testsuite/g++.dg/tree-ssa/ |
| H A D | pr78687.C | 436 , quals_(quals)
446 int quals_;
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| /dports/devel/riscv64-none-elf-gcc/gcc-8.4.0/gcc/testsuite/g++.dg/tree-ssa/ |
| H A D | pr78687.C | 436 , quals_(quals)
446 int quals_;
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| /dports/lang/gcc9-aux/gcc-9.1.0/gcc/testsuite/g++.dg/tree-ssa/ |
| H A D | pr78687.C | 436 , quals_(quals)
446 int quals_;
|
| /dports/misc/cxx_atomics_pic/gcc-11.2.0/gcc/testsuite/g++.dg/tree-ssa/ |
| H A D | pr78687.C | 436 , quals_(quals)
446 int quals_;
|
| /dports/lang/gcc10/gcc-10.3.0/gcc/testsuite/g++.dg/tree-ssa/ |
| H A D | pr78687.C | 436 , quals_(quals)
446 int quals_;
|
| /dports/lang/gcc9-devel/gcc-9-20211007/gcc/testsuite/g++.dg/tree-ssa/ |
| H A D | pr78687.C | 436 , quals_(quals)
446 int quals_;
|
| /dports/devel/riscv32-unknown-elf-gcc/gcc-8.4.0/gcc/testsuite/g++.dg/tree-ssa/ |
| H A D | pr78687.C | 436 , quals_(quals)
446 int quals_;
|
| /dports/lang/gcc11-devel/gcc-11-20211009/gcc/testsuite/g++.dg/tree-ssa/ |
| H A D | pr78687.C | 436 , quals_(quals)
446 int quals_;
|
| /dports/lang/gcc8/gcc-8.5.0/gcc/testsuite/g++.dg/tree-ssa/ |
| H A D | pr78687.C | 436 , quals_(quals)
446 int quals_;
|
| /dports/lang/gcc10-devel/gcc-10-20211008/gcc/testsuite/g++.dg/tree-ssa/ |
| H A D | pr78687.C | 436 , quals_(quals)
446 int quals_;
|
| /dports/lang/gcc12-devel/gcc-12-20211205/gcc/testsuite/g++.dg/tree-ssa/ |
| H A D | pr78687.C | 436 , quals_(quals)
446 int quals_;
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| /dports/biology/bbmap/bbmap/current/stream/ |
| H A D | Read.java | 41 public Read(byte[] bases_, byte[] quals_, long id_){ in Read() argument
42 this(bases_, quals_, Long.toString(id_), id_); in Read()
45 public Read(byte[] bases_, byte[] quals_, String name_, long id_){ in Read() argument
46 this(bases_, quals_, name_, id_, 0, -1, -1, -1); in Read()
49 public Read(byte[] bases_, byte[] quals_, String name_, long id_, int flag_){ in Read() argument
50 this(bases_, quals_, name_, id_, flag_, -1, -1, -1); in Read()
53 public Read(byte[] s_, byte[] quals_, long id_, int chrom_, int start_, int stop_, byte strand_){ in Read() argument
54 this(s_, quals_, Long.toString(id_), id_, (int)strand_, chrom_, start_, stop_); in Read()
64 …public Read(byte[] bases_, byte[] quals_, String id_, long numericID_, int flags_, int chrom_, int… in Read() argument
67 quality=quals_; in Read()
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| /dports/biology/bbmap/bbmap/current/consensus/ |
| H A D | BaseGraph.java | 37 public BaseGraph(String name_, byte[] bases_, byte[] quals_, long numericID_, int pad_){ in BaseGraph() argument
41 refWeights=makeWeightsFromQual(quals_); in BaseGraph()
|