Searched refs:randyQual (Results 1 – 2 of 2) sorted by relevance
315 public static byte[] makeQualityArray(int length, Random randyQual,322 int hilo=randyQual.nextInt();336 int delta=(randyQual.nextInt(range)+randyQual.nextInt(range+1))/2;340 int delta=Tools.min(randyQual.nextInt(range), randyQual.nextInt(range));351 out[i]=(byte)Tools.max(out[i]-(y+randyQual.nextInt(y+1))/2, minQual);352 out[length-i-1]=(byte)Tools.max(out[length-i-1]-(y+randyQual.nextInt(y+1))/2, minQual);358 delta=(byte)(randyQual.nextInt(variance+1)+randyQual.nextInt(variance+1)-variance);
614 randyQual=new Random(seed+5); in RandomReads3()1154 slant=(byte)((randyQual.nextInt(baseSlant)+randyQual.nextInt(baseSlant)+1)/2); in writeRandomReadsX()1155 if(Tools.nextBoolean(randyQual)){ in writeRandomReadsX()1157 int delta=Tools.min(randyQual.nextInt(range), randyQual.nextInt(range)); in writeRandomReadsX()1161 int delta=randyQual.nextInt(range); in writeRandomReadsX()1332 slant=(byte)((randyQual.nextInt(baseSlant)+randyQual.nextInt(baseSlant)+1)/2); in makeRandomReadsX()1333 if(Tools.nextBoolean(randyQual)){ in makeRandomReadsX()1335 int delta=Tools.min(randyQual.nextInt(range), randyQual.nextInt(range)); in makeRandomReadsX()1339 int delta=randyQual.nextInt(range); in makeRandomReadsX()1762 …addPacBioErrors(r, randyQual.nextFloat()*(pbMaxErrorRate-pbMinErrorRate)+pbMinErrorRate, (1+randyQ… in makeRead()[all …]