Searched refs:rankPrefixes (Results 1 – 3 of 3) sorted by relevance
38 rankPrefixes = {-1: 'l__', 0: 'k__', 1: 'p__', 2: 'c__', 3: 'o__', 4: 'f__', 5: 'g__', 6: 's__', 7:… variable45 t.append(rankPrefixes[i] + taxonomy[i])82 lca.append(rankPrefixes[i] + 'unmapped')84 lca.append(rankPrefixes[i] + 'unclassified')
38 from checkm.util.taxonomyUtils import rankPrefixes, ranksByLevel95 rankPrefix = rankPrefixes[len(taxonomy)-1]
40 from checkm.util.taxonomyUtils import rankPrefixes468 taxon = rankPrefixes[r] + taxon