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Searched refs:rans3 (Results 1 – 11 of 11) sorted by relevance

/dports/biology/vt/vt-0.57721/lib/htslib/cram/
H A DrANS_static.c74 RansState rans0, rans1, rans2, rans3; in rans_compress_O0() local
155 RansEncInit(&rans3); in rans_compress_O0()
176 RansEncFlush(&rans3, &ptr); in rans_compress_O0()
269 RansState rans0, rans1, rans2, rans3; in rans_uncompress_O0() local
274 RansDecInit(&rans3, &ptr); in rans_uncompress_O0()
286 R[3] = rans3; in rans_uncompress_O0()
488 RansState rans0, rans1, rans2, rans3; in rans_compress_O1() local
492 RansEncInit(&rans3); in rans_compress_O1()
538 RansEncFlush(&rans3, &ptr); in rans_compress_O1()
672 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) goto cleanup; in rans_uncompress_O1()
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/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/
H A DrANS_static.c74 RansState rans0, rans1, rans2, rans3; in rans_compress_O0() local
155 RansEncInit(&rans3); in rans_compress_O0()
176 RansEncFlush(&rans3, &ptr); in rans_compress_O0()
269 RansState rans0, rans1, rans2, rans3; in rans_uncompress_O0() local
274 RansDecInit(&rans3, &ptr); in rans_uncompress_O0()
286 R[3] = rans3; in rans_uncompress_O0()
488 RansState rans0, rans1, rans2, rans3; in rans_compress_O1() local
492 RansEncInit(&rans3); in rans_compress_O1()
538 RansEncFlush(&rans3, &ptr); in rans_compress_O1()
672 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) goto cleanup; in rans_uncompress_O1()
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/dports/biology/stacks/stacks-2.4/htslib/cram/
H A DrANS_static.c74 RansState rans0, rans1, rans2, rans3; in rans_compress_O0() local
155 RansEncInit(&rans3); in rans_compress_O0()
170 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O0()
176 RansEncFlush(&rans3, &ptr); in rans_compress_O0()
273 RansDecInit(&rans3, &ptr); in rans_uncompress_O0()
285 R[3] = rans3; in rans_uncompress_O0()
491 RansEncInit(&rans3); in rans_compress_O1()
521 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O1()
537 RansEncFlush(&rans3, &ptr); in rans_compress_O1()
665 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) goto cleanup; in rans_uncompress_O1()
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/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/
H A DrANS_static.c74 RansState rans0, rans1, rans2, rans3; in rans_compress_O0() local
155 RansEncInit(&rans3); in rans_compress_O0()
170 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O0()
176 RansEncFlush(&rans3, &ptr); in rans_compress_O0()
273 RansDecInit(&rans3, &ptr); in rans_uncompress_O0()
285 R[3] = rans3; in rans_uncompress_O0()
491 RansEncInit(&rans3); in rans_compress_O1()
521 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O1()
537 RansEncFlush(&rans3, &ptr); in rans_compress_O1()
665 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) goto cleanup; in rans_uncompress_O1()
[all …]
/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/cram/
H A DrANS_static.c76 RansState rans0, rans1, rans2, rans3; in rans_compress_O0() local
157 RansEncInit(&rans3); in rans_compress_O0()
178 RansEncFlush(&rans3, &ptr); in rans_compress_O0()
276 RansState rans0, rans1, rans2, rans3; in rans_uncompress_O0() local
281 RansDecInit(&rans3, &ptr); in rans_uncompress_O0()
293 R[3] = rans3; in rans_uncompress_O0()
498 RansState rans0, rans1, rans2, rans3; in rans_compress_O1() local
502 RansEncInit(&rans3); in rans_compress_O1()
548 RansEncFlush(&rans3, &ptr); in rans_compress_O1()
687 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) goto cleanup; in rans_uncompress_O1()
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/dports/biology/py-pysam/pysam-0.18.0/htslib/htscodecs/htscodecs/
H A DrANS_static.c93 RansState rans3; in rans_compress_O0() local
173 RansEncInit(&rans3); in rans_compress_O0()
188 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O0()
194 RansEncFlush(&rans3, &ptr); in rans_compress_O0()
550 RansState rans0, rans1, rans2, rans3; in rans_compress_O1() local
554 RansEncInit(&rans3); in rans_compress_O1()
573 RansEncPutSymbol(&rans3, &ptr, &syms[c3][l3]); in rans_compress_O1()
602 RansEncFlush(&rans3, &ptr); in rans_compress_O1()
818 RansState rans0, rans1, rans2, rans3; in rans_uncompress_O1() local
824 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) return NULL; in rans_uncompress_O1()
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H A DrANS_static4x16pr.c386 RansState rans3; in rans_compress_O0_4x16() local
440 RansEncInit(&rans3); in rans_compress_O0_4x16()
456 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O0_4x16()
464 if (rans3 >= s3->x_max) *--ptr16 = (uint16_t)rans3, rans3 >>= 16; in rans_compress_O0_4x16()
468 rans3 += s3->bias + q3 * s3->cmpl_freq; in rans_compress_O0_4x16()
482 RansEncFlush(&rans3, &ptr); in rans_compress_O0_4x16()
790 RansEncInit(&rans3); in rans_compress_O1_4x16()
820 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O1_4x16()
836 RansEncFlush(&rans3, &ptr); in rans_compress_O1_4x16()
1013 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) goto err; in rans_uncompress_O1_4x16()
[all …]
/dports/biology/htslib/htslib-1.14/htscodecs/htscodecs/
H A DrANS_static.c93 RansState rans3; in rans_compress_O0() local
173 RansEncInit(&rans3); in rans_compress_O0()
188 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O0()
194 RansEncFlush(&rans3, &ptr); in rans_compress_O0()
550 RansState rans0, rans1, rans2, rans3; in rans_compress_O1() local
554 RansEncInit(&rans3); in rans_compress_O1()
573 RansEncPutSymbol(&rans3, &ptr, &syms[c3][l3]); in rans_compress_O1()
602 RansEncFlush(&rans3, &ptr); in rans_compress_O1()
818 RansState rans0, rans1, rans2, rans3; in rans_uncompress_O1() local
824 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) return NULL; in rans_uncompress_O1()
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H A DrANS_static4x16pr.c386 RansState rans3; in rans_compress_O0_4x16() local
440 RansEncInit(&rans3); in rans_compress_O0_4x16()
456 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O0_4x16()
464 if (rans3 >= s3->x_max) *--ptr16 = (uint16_t)rans3, rans3 >>= 16; in rans_compress_O0_4x16()
468 rans3 += s3->bias + q3 * s3->cmpl_freq; in rans_compress_O0_4x16()
482 RansEncFlush(&rans3, &ptr); in rans_compress_O0_4x16()
790 RansEncInit(&rans3); in rans_compress_O1_4x16()
820 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O1_4x16()
836 RansEncFlush(&rans3, &ptr); in rans_compress_O1_4x16()
1013 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) goto err; in rans_uncompress_O1_4x16()
[all …]
/dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/
H A DrANS_static.c539 RansState rans3; in rans_compress_O0() local
619 RansEncInit(&rans3); in rans_compress_O0()
634 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O0()
640 RansEncFlush(&rans3, &ptr); in rans_compress_O0()
957 RansState rans0, rans1, rans2, rans3; in rans_compress_O1() local
961 RansEncInit(&rans3); in rans_compress_O1()
995 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O1()
1011 RansEncFlush(&rans3, &ptr); in rans_compress_O1()
1142 RansState rans0, rans1, rans2, rans3; in rans_uncompress_O1() local
1147 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) return NULL; in rans_uncompress_O1()
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H A DrANS_static4x16pr.c839 RansState rans3; in rans_compress_O0_4x16() local
879 RansEncInit(&rans3); in rans_compress_O0_4x16()
895 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O0_4x16()
903 if (rans3 >= s3->x_max) *--ptr16 = (uint16_t)rans3, rans3 >>= 16; in rans_compress_O0_4x16()
907 rans3 += s3->bias + q3 * s3->cmpl_freq; in rans_compress_O0_4x16()
921 RansEncFlush(&rans3, &ptr); in rans_compress_O0_4x16()
1981 RansEncInit(&rans3); in rans_compress_O1_4x16()
2011 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O1_4x16()
2027 RansEncFlush(&rans3, &ptr); in rans_compress_O1_4x16()
2198 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) goto err; in rans_uncompress_O1sfb_4x16()
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