/dports/biology/vt/vt-0.57721/lib/htslib/cram/ |
H A D | rANS_static.c | 74 RansState rans0, rans1, rans2, rans3; in rans_compress_O0() local 155 RansEncInit(&rans3); in rans_compress_O0() 176 RansEncFlush(&rans3, &ptr); in rans_compress_O0() 269 RansState rans0, rans1, rans2, rans3; in rans_uncompress_O0() local 274 RansDecInit(&rans3, &ptr); in rans_uncompress_O0() 286 R[3] = rans3; in rans_uncompress_O0() 488 RansState rans0, rans1, rans2, rans3; in rans_compress_O1() local 492 RansEncInit(&rans3); in rans_compress_O1() 538 RansEncFlush(&rans3, &ptr); in rans_compress_O1() 672 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) goto cleanup; in rans_uncompress_O1() [all …]
|
/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/ |
H A D | rANS_static.c | 74 RansState rans0, rans1, rans2, rans3; in rans_compress_O0() local 155 RansEncInit(&rans3); in rans_compress_O0() 176 RansEncFlush(&rans3, &ptr); in rans_compress_O0() 269 RansState rans0, rans1, rans2, rans3; in rans_uncompress_O0() local 274 RansDecInit(&rans3, &ptr); in rans_uncompress_O0() 286 R[3] = rans3; in rans_uncompress_O0() 488 RansState rans0, rans1, rans2, rans3; in rans_compress_O1() local 492 RansEncInit(&rans3); in rans_compress_O1() 538 RansEncFlush(&rans3, &ptr); in rans_compress_O1() 672 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) goto cleanup; in rans_uncompress_O1() [all …]
|
/dports/biology/stacks/stacks-2.4/htslib/cram/ |
H A D | rANS_static.c | 74 RansState rans0, rans1, rans2, rans3; in rans_compress_O0() local 155 RansEncInit(&rans3); in rans_compress_O0() 170 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O0() 176 RansEncFlush(&rans3, &ptr); in rans_compress_O0() 273 RansDecInit(&rans3, &ptr); in rans_uncompress_O0() 285 R[3] = rans3; in rans_uncompress_O0() 491 RansEncInit(&rans3); in rans_compress_O1() 521 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O1() 537 RansEncFlush(&rans3, &ptr); in rans_compress_O1() 665 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) goto cleanup; in rans_uncompress_O1() [all …]
|
/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/ |
H A D | rANS_static.c | 74 RansState rans0, rans1, rans2, rans3; in rans_compress_O0() local 155 RansEncInit(&rans3); in rans_compress_O0() 170 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O0() 176 RansEncFlush(&rans3, &ptr); in rans_compress_O0() 273 RansDecInit(&rans3, &ptr); in rans_uncompress_O0() 285 R[3] = rans3; in rans_uncompress_O0() 491 RansEncInit(&rans3); in rans_compress_O1() 521 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O1() 537 RansEncFlush(&rans3, &ptr); in rans_compress_O1() 665 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) goto cleanup; in rans_uncompress_O1() [all …]
|
/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/cram/ |
H A D | rANS_static.c | 76 RansState rans0, rans1, rans2, rans3; in rans_compress_O0() local 157 RansEncInit(&rans3); in rans_compress_O0() 178 RansEncFlush(&rans3, &ptr); in rans_compress_O0() 276 RansState rans0, rans1, rans2, rans3; in rans_uncompress_O0() local 281 RansDecInit(&rans3, &ptr); in rans_uncompress_O0() 293 R[3] = rans3; in rans_uncompress_O0() 498 RansState rans0, rans1, rans2, rans3; in rans_compress_O1() local 502 RansEncInit(&rans3); in rans_compress_O1() 548 RansEncFlush(&rans3, &ptr); in rans_compress_O1() 687 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) goto cleanup; in rans_uncompress_O1() [all …]
|
/dports/biology/py-pysam/pysam-0.18.0/htslib/htscodecs/htscodecs/ |
H A D | rANS_static.c | 93 RansState rans3; in rans_compress_O0() local 173 RansEncInit(&rans3); in rans_compress_O0() 188 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O0() 194 RansEncFlush(&rans3, &ptr); in rans_compress_O0() 550 RansState rans0, rans1, rans2, rans3; in rans_compress_O1() local 554 RansEncInit(&rans3); in rans_compress_O1() 573 RansEncPutSymbol(&rans3, &ptr, &syms[c3][l3]); in rans_compress_O1() 602 RansEncFlush(&rans3, &ptr); in rans_compress_O1() 818 RansState rans0, rans1, rans2, rans3; in rans_uncompress_O1() local 824 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) return NULL; in rans_uncompress_O1() [all …]
|
H A D | rANS_static4x16pr.c | 386 RansState rans3; in rans_compress_O0_4x16() local 440 RansEncInit(&rans3); in rans_compress_O0_4x16() 456 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O0_4x16() 464 if (rans3 >= s3->x_max) *--ptr16 = (uint16_t)rans3, rans3 >>= 16; in rans_compress_O0_4x16() 468 rans3 += s3->bias + q3 * s3->cmpl_freq; in rans_compress_O0_4x16() 482 RansEncFlush(&rans3, &ptr); in rans_compress_O0_4x16() 790 RansEncInit(&rans3); in rans_compress_O1_4x16() 820 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O1_4x16() 836 RansEncFlush(&rans3, &ptr); in rans_compress_O1_4x16() 1013 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) goto err; in rans_uncompress_O1_4x16() [all …]
|
/dports/biology/htslib/htslib-1.14/htscodecs/htscodecs/ |
H A D | rANS_static.c | 93 RansState rans3; in rans_compress_O0() local 173 RansEncInit(&rans3); in rans_compress_O0() 188 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O0() 194 RansEncFlush(&rans3, &ptr); in rans_compress_O0() 550 RansState rans0, rans1, rans2, rans3; in rans_compress_O1() local 554 RansEncInit(&rans3); in rans_compress_O1() 573 RansEncPutSymbol(&rans3, &ptr, &syms[c3][l3]); in rans_compress_O1() 602 RansEncFlush(&rans3, &ptr); in rans_compress_O1() 818 RansState rans0, rans1, rans2, rans3; in rans_uncompress_O1() local 824 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) return NULL; in rans_uncompress_O1() [all …]
|
H A D | rANS_static4x16pr.c | 386 RansState rans3; in rans_compress_O0_4x16() local 440 RansEncInit(&rans3); in rans_compress_O0_4x16() 456 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O0_4x16() 464 if (rans3 >= s3->x_max) *--ptr16 = (uint16_t)rans3, rans3 >>= 16; in rans_compress_O0_4x16() 468 rans3 += s3->bias + q3 * s3->cmpl_freq; in rans_compress_O0_4x16() 482 RansEncFlush(&rans3, &ptr); in rans_compress_O0_4x16() 790 RansEncInit(&rans3); in rans_compress_O1_4x16() 820 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O1_4x16() 836 RansEncFlush(&rans3, &ptr); in rans_compress_O1_4x16() 1013 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) goto err; in rans_uncompress_O1_4x16() [all …]
|
/dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/ |
H A D | rANS_static.c | 539 RansState rans3; in rans_compress_O0() local 619 RansEncInit(&rans3); in rans_compress_O0() 634 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O0() 640 RansEncFlush(&rans3, &ptr); in rans_compress_O0() 957 RansState rans0, rans1, rans2, rans3; in rans_compress_O1() local 961 RansEncInit(&rans3); in rans_compress_O1() 995 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O1() 1011 RansEncFlush(&rans3, &ptr); in rans_compress_O1() 1142 RansState rans0, rans1, rans2, rans3; in rans_uncompress_O1() local 1147 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) return NULL; in rans_uncompress_O1() [all …]
|
H A D | rANS_static4x16pr.c | 839 RansState rans3; in rans_compress_O0_4x16() local 879 RansEncInit(&rans3); in rans_compress_O0_4x16() 895 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O0_4x16() 903 if (rans3 >= s3->x_max) *--ptr16 = (uint16_t)rans3, rans3 >>= 16; in rans_compress_O0_4x16() 907 rans3 += s3->bias + q3 * s3->cmpl_freq; in rans_compress_O0_4x16() 921 RansEncFlush(&rans3, &ptr); in rans_compress_O0_4x16() 1981 RansEncInit(&rans3); in rans_compress_O1_4x16() 2011 RansEncPutSymbol(&rans3, &ptr, s3); in rans_compress_O1_4x16() 2027 RansEncFlush(&rans3, &ptr); in rans_compress_O1_4x16() 2198 RansDecInit(&rans3, &ptr); if (rans3 < RANS_BYTE_L) goto err; in rans_uncompress_O1sfb_4x16() [all …]
|