Searched refs:raregeno_word (Results 1 – 5 of 5) sorted by relevance
611 uintptr_t raregeno_word = 0; in SaveLdDifflist() local623 …raregeno_word |= ((cur_geno_word >> (2 * sample_idx_lowbits)) & 3) << (2 * (difflist_idx % kBitsPe… in SaveLdDifflist()637 … SubwordStore(raregeno_word, 1 + (((difflist_len - 1) / 4) % sizeof(intptr_t)), raregeno_iter); in SaveLdDifflist()642 *raregeno_iter++ = raregeno_word; in SaveLdDifflist()643 raregeno_word = 0; in SaveLdDifflist()764 uintptr_t raregeno_word = 0; in SaveOnebit() local781 *raregeno_iter++ = raregeno_word; in SaveOnebit()782 raregeno_word = 0; in SaveOnebit()787 *raregeno_iter++ = raregeno_word; in SaveOnebit()788 raregeno_word = 0; in SaveOnebit()[all …]
2785 uintptr_t raregeno_word = *raregeno_incr++; in PgrDifflistToGenovecUnsafe() local2788 …genovec[cur_sample_idx / kBitsPerWordD2] |= (raregeno_word & 3) << (2 * (cur_sample_idx % kBitsPer… in PgrDifflistToGenovecUnsafe()2789 raregeno_word >>= 2; in PgrDifflistToGenovecUnsafe()2800 uintptr_t raregeno_word = *raregeno_incr++; in PgrDifflistToGenovecUnsafe() local2803 AssignNyparrEntry(cur_sample_idx, raregeno_word & 3, genovec); in PgrDifflistToGenovecUnsafe()2804 raregeno_word >>= 2; in PgrDifflistToGenovecUnsafe()
1907 uintptr_t raregeno_word = 0; in ParseAndSaveDifflistProperSubset() local1914 *raregeno_iter = raregeno_word; in ParseAndSaveDifflistProperSubset()1944 …raregeno_word |= ((raregeno_workspace_word >> (2 * raw_difflist_idx_lowbits)) & 3) << (difflist_le… in ParseAndSaveDifflistProperSubset()1947 *raregeno_iter++ = raregeno_word; in ParseAndSaveDifflistProperSubset()1948 raregeno_word = 0; in ParseAndSaveDifflistProperSubset()
5554 if (!raregeno_word) { in GetSingletonIdxSparse()5557 raregeno_word = (raregeno_word ^ (raregeno_word >> 1)) & kMask5555; in GetSingletonIdxSparse()5558 if (!raregeno_word) { in GetSingletonIdxSparse()5574 if (!raregeno_word) { in UpdateSampleDiploidSingletonCountSparseX()5577 raregeno_word = (raregeno_word ^ (raregeno_word >> 1)) & kMask5555; in UpdateSampleDiploidSingletonCountSparseX()5578 if (!raregeno_word) { in UpdateSampleDiploidSingletonCountSparseX()5591 raregeno_word = raregeno_word & (raregeno_word - 1); in UpdateSampleDiploidSingletonCountSparseX()5604 if (!raregeno_word) { in UpdateSampleSingletonCountSparseX()5615 uintptr_t geno1_word = raregeno_word & (~(raregeno_word >> 1)) & kMask5555; in UpdateSampleSingletonCountSparseX()5641 raregeno_word = (~raregeno_word) & (raregeno_word >> 1) & kMask5555; in UpdateSampleSingletonCountSparseY()[all …]
7055 uintptr_t raregeno_word = raregeno[widx]; in VscoreThread() local7056 uintptr_t raregeno_invword = ~raregeno_word; in VscoreThread()7057 missing_ct += Popcount01Word(raregeno_word & (raregeno_word >> 1) & kMask5555); in VscoreThread()