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Searched refs:re_target (Results 1 – 9 of 9) sorted by relevance

/dports/biology/infernal/infernal-1.1.3/hmmer/src/
H A Dp7_builder.c65 bld->re_target = -1.0; in p7_builder_Create()
98 bld->re_target = esl_opt_GetReal(go, "--ere"); in p7_builder_Create()
101 case eslAMINO: bld->re_target = p7_ETARGET_AMINO; break; in p7_builder_Create()
102 case eslDNA: bld->re_target = p7_ETARGET_DNA; break; in p7_builder_Create()
103 case eslRNA: bld->re_target = p7_ETARGET_DNA; break; in p7_builder_Create()
104 default: bld->re_target = p7_ETARGET_OTHER; break; in p7_builder_Create()
882 etarget = ESL_MAX(bld->re_target, etarget); in effective_seqnumber()
916 etarget = ESL_MAX(bld->re_target, etarget); in effective_seqnumber()
H A Dhmmer.h1277 double re_target; /* rel entropy target for effn eweighting, if set; or -1.0*/ member
/dports/biology/hmmer/hmmer-3.3/src/
H A Dp7_builder.c65 bld->re_target = -1.0; in p7_builder_Create()
98 bld->re_target = esl_opt_GetReal(go, "--ere"); in p7_builder_Create()
101 case eslAMINO: bld->re_target = p7_ETARGET_AMINO; break; in p7_builder_Create()
102 case eslDNA: bld->re_target = p7_ETARGET_DNA; break; in p7_builder_Create()
103 case eslRNA: bld->re_target = p7_ETARGET_DNA; break; in p7_builder_Create()
104 default: bld->re_target = p7_ETARGET_OTHER; break; in p7_builder_Create()
882 etarget = ESL_MAX(bld->re_target, etarget); in effective_seqnumber()
916 etarget = ESL_MAX(bld->re_target, etarget); in effective_seqnumber()
H A Dhmmer.h1277 double re_target; /* rel entropy target for effn eweighting, if set; or -1.0*/ member
/dports/lang/swi-pl/swipl-8.2.3/packages/xpce/src/
H A Dtest.pl534 re_target(In, atom, In).
535 re_target(In, text_buffer, TB) :-
537 re_target(In, fragment, Frag) :-
563 re_target(In, How, Target),
/dports/biology/infernal/infernal-1.1.3/src/
H A Dcmbuild.c882 …cfg->fp7_bld->re_target = esl_opt_IsOn(go, "--p7ere") ? esl_opt_GetReal(go, "--p7ere") : DEFAULT_… in init_cfg()
2198 double re_target; in set_target_relent() local
2202 re_target = esl_opt_GetReal(go, "--ere"); in set_target_relent()
2207 re_target = (nbps > 0) ? DEFAULT_ETARGET : DEFAULT_ETARGET_HMMFILTER; in set_target_relent()
2211 etarget = ESL_MAX(etarget, re_target); in set_target_relent()
/dports/www/p5-WWW-Mixi/WWW-Mixi-0.50/lib/WWW/
H A DMixi.pm2913 my $re_target = join('|', keys(%escaped));
2914 $str =~ s/($re_target)/$escaped{$1}/g;
2922 my $re_target = join('|', keys(%unescaped));
2923 …$str =~ s/&($re_target|#x([0-9a-z]+));/defined($unescaped{$1}) ? $unescaped{$1} : defined($2) ? ch…
/dports/textproc/txt2tags/txt2tags-3.7/
H A Dtxt2tags.py2565 re_target = target or "[a-z]*"
2576 % (re_name, re_target),
/dports/games/burrtools/burrtools-0.6.3/doc_src/
H A Dtxt2tags.py2085 re_target = target or '[a-z]*'
2093 """%(re_name,re_target), re.I+re.VERBOSE)