Searched refs:re_target (Results 1 – 9 of 9) sorted by relevance
/dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
H A D | p7_builder.c | 65 bld->re_target = -1.0; in p7_builder_Create() 98 bld->re_target = esl_opt_GetReal(go, "--ere"); in p7_builder_Create() 101 case eslAMINO: bld->re_target = p7_ETARGET_AMINO; break; in p7_builder_Create() 102 case eslDNA: bld->re_target = p7_ETARGET_DNA; break; in p7_builder_Create() 103 case eslRNA: bld->re_target = p7_ETARGET_DNA; break; in p7_builder_Create() 104 default: bld->re_target = p7_ETARGET_OTHER; break; in p7_builder_Create() 882 etarget = ESL_MAX(bld->re_target, etarget); in effective_seqnumber() 916 etarget = ESL_MAX(bld->re_target, etarget); in effective_seqnumber()
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H A D | hmmer.h | 1277 double re_target; /* rel entropy target for effn eweighting, if set; or -1.0*/ member
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/dports/biology/hmmer/hmmer-3.3/src/ |
H A D | p7_builder.c | 65 bld->re_target = -1.0; in p7_builder_Create() 98 bld->re_target = esl_opt_GetReal(go, "--ere"); in p7_builder_Create() 101 case eslAMINO: bld->re_target = p7_ETARGET_AMINO; break; in p7_builder_Create() 102 case eslDNA: bld->re_target = p7_ETARGET_DNA; break; in p7_builder_Create() 103 case eslRNA: bld->re_target = p7_ETARGET_DNA; break; in p7_builder_Create() 104 default: bld->re_target = p7_ETARGET_OTHER; break; in p7_builder_Create() 882 etarget = ESL_MAX(bld->re_target, etarget); in effective_seqnumber() 916 etarget = ESL_MAX(bld->re_target, etarget); in effective_seqnumber()
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H A D | hmmer.h | 1277 double re_target; /* rel entropy target for effn eweighting, if set; or -1.0*/ member
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/dports/lang/swi-pl/swipl-8.2.3/packages/xpce/src/ |
H A D | test.pl | 534 re_target(In, atom, In). 535 re_target(In, text_buffer, TB) :- 537 re_target(In, fragment, Frag) :- 563 re_target(In, How, Target),
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/dports/biology/infernal/infernal-1.1.3/src/ |
H A D | cmbuild.c | 882 …cfg->fp7_bld->re_target = esl_opt_IsOn(go, "--p7ere") ? esl_opt_GetReal(go, "--p7ere") : DEFAULT_… in init_cfg() 2198 double re_target; in set_target_relent() local 2202 re_target = esl_opt_GetReal(go, "--ere"); in set_target_relent() 2207 re_target = (nbps > 0) ? DEFAULT_ETARGET : DEFAULT_ETARGET_HMMFILTER; in set_target_relent() 2211 etarget = ESL_MAX(etarget, re_target); in set_target_relent()
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/dports/www/p5-WWW-Mixi/WWW-Mixi-0.50/lib/WWW/ |
H A D | Mixi.pm | 2913 my $re_target = join('|', keys(%escaped)); 2914 $str =~ s/($re_target)/$escaped{$1}/g; 2922 my $re_target = join('|', keys(%unescaped)); 2923 …$str =~ s/&($re_target|#x([0-9a-z]+));/defined($unescaped{$1}) ? $unescaped{$1} : defined($2) ? ch…
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/dports/textproc/txt2tags/txt2tags-3.7/ |
H A D | txt2tags.py | 2565 re_target = target or "[a-z]*" 2576 % (re_name, re_target),
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/dports/games/burrtools/burrtools-0.6.3/doc_src/ |
H A D | txt2tags.py | 2085 re_target = target or '[a-z]*' 2093 """%(re_name,re_target), re.I+re.VERBOSE)
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