Searched refs:readHasMappedMate (Results 1 – 3 of 3) sorted by relevance
38 ….getReadUnmappedFlag(), rec.isSecondaryOrSupplementary(), ReadUtils.readHasMappedMate(rec), rec.ge… in updateMetrics()42 …sSecondaryAlignment() || read.isSupplementaryAlignment(), ReadUtils.readHasMappedMate(read), read.… in updateMetrics()
138 PairedEnds fragment = (ReadUtils.readHasMappedMate(read)) ? in transformToDuplicateNames()165 .filter(readWithIndex -> ReadUtils.readHasMappedMate(readWithIndex.getValue())) in transformToDuplicateNames()
311 public static boolean readHasMappedMate( final GATKRead read ) { in readHasMappedMate() method in ReadUtils319 public static boolean readHasMappedMate( final SAMRecord read ) { in readHasMappedMate() method in ReadUtils