/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/engine/ |
H A D | AssemblyRegionIterator.java | 39 private final SAMFileHeader readHeader; field in AssemblyRegionIterator 64 final SAMFileHeader readHeader, in AssemblyRegionIterator() argument 71 Utils.nonNull(readHeader); in AssemblyRegionIterator() 77 this.readHeader = readHeader; in AssemblyRegionIterator() 88 …shold, BandPassActivityProfile.MAX_FILTER_SIZE, BandPassActivityProfile.DEFAULT_SIGMA, readHeader); in AssemblyRegionIterator() 92 …tor, DownsamplingMethod.NONE, false, ReadUtils.getSamplesFromHeader(readHeader), readHeader, true); in AssemblyRegionIterator() 94 …or = new IntervalAlignmentContextIterator(libs, intervalLocusIterator, readHeader.getSequenceDicti… in AssemblyRegionIterator() 141 …s.isAfter(pileup.getLocation(), pendingRegions.peek().getPaddedSpan(), readHeader.getSequenceDicti… in loadNextAssemblyRegion() 197 …if ( IntervalUtils.isAfter(nextRead, region.getPaddedSpan(), readHeader.getSequenceDictionary()) )… in fillNextAssemblyRegionWithReads()
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H A D | AssemblyRegionFromActivityProfileStateIterator.java | 23 private final SAMFileHeader readHeader; field in AssemblyRegionFromActivityProfileStateIterator 45 final SAMFileHeader readHeader, in AssemblyRegionFromActivityProfileStateIterator() argument 52 Utils.nonNull(readHeader); in AssemblyRegionFromActivityProfileStateIterator() 61 this.readHeader = readHeader; in AssemblyRegionFromActivityProfileStateIterator() 68 …shold, BandPassActivityProfile.MAX_FILTER_SIZE, BandPassActivityProfile.DEFAULT_SIGMA, readHeader); in AssemblyRegionFromActivityProfileStateIterator() 109 …Utils.isAfter(profile.getLoc(), pendingRegions.peek().getPaddedSpan(), readHeader.getSequenceDicti… in loadNextAssemblyRegion()
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H A D | ActivityProfileStateIterator.java | 48 final SAMFileHeader readHeader, in ActivityProfileStateIterator() argument 54 Utils.nonNull(readHeader); in ActivityProfileStateIterator() 63 …r(), DownsamplingMethod.NONE, false, ReadUtils.getSamplesFromHeader(readHeader), readHeader, true); in ActivityProfileStateIterator() 65 …or = new IntervalAlignmentContextIterator(libs, intervalLocusIterator, readHeader.getSequenceDicti… in ActivityProfileStateIterator()
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/dports/net/mvfst/mvfst-248b2dc39bbd36863bbaa50385e8683428610009/quic/codec/test/ |
H A D | TypesTest.cpp | 271 PacketHeader readHeader(std::move(handshakeLongHeader)); in TEST_F() local 272 EXPECT_NE(readHeader.asLong(), nullptr); in TEST_F() 273 EXPECT_EQ(readHeader.asShort(), nullptr); in TEST_F() 274 EXPECT_EQ(readHeader.getPacketSequenceNum(), packetNumber); in TEST_F() 275 EXPECT_EQ(readHeader.getHeaderForm(), HeaderForm::Long); in TEST_F() 285 PacketHeader readHeader(std::move(shortHeader)); in TEST_F() local 286 EXPECT_EQ(readHeader.asLong(), nullptr); in TEST_F() 287 EXPECT_NE(readHeader.asShort(), nullptr); in TEST_F() 288 EXPECT_EQ(readHeader.getPacketSequenceNum(), packetNumber); in TEST_F() 289 EXPECT_EQ(readHeader.getHeaderForm(), HeaderForm::Short); in TEST_F() [all …]
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/dports/graphics/ossim/ossim-OrchidIsland-2.11.1/src/base/ |
H A D | ossimNadconGridDatum.cpp | 43 if(header.readHeader(theDatumDirectory.dirCat("conus.las"))) in ossimNadconGridDatum() 47 if(header.readHeader(theDatumDirectory.dirCat("hawaii.las"))) in ossimNadconGridDatum() 51 if(header.readHeader(theDatumDirectory.dirCat("alaska.las"))) in ossimNadconGridDatum() 55 if(header.readHeader(theDatumDirectory.dirCat("stgeorge.las"))) in ossimNadconGridDatum() 59 if(header.readHeader(theDatumDirectory.dirCat("stlrnc.las"))) in ossimNadconGridDatum() 63 if(header.readHeader(theDatumDirectory.dirCat("stpaul.las"))) in ossimNadconGridDatum() 67 if(header.readHeader(theDatumDirectory.dirCat("prvi.las"))) in ossimNadconGridDatum()
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/dports/devel/hadoop2/hadoop-2.7.2-src/hadoop-hdfs-project/hadoop-hdfs/src/main/java/org/apache/hadoop/hdfs/server/datanode/ |
H A D | BlockMetadataHeader.java | 102 final BlockMetadataHeader header = readHeader(metaIn); in readDataChecksum() 139 public static BlockMetadataHeader readHeader(DataInputStream in) throws IOException { in readHeader() method in BlockMetadataHeader 140 return readHeader(in.readShort(), in); in readHeader() 149 public static BlockMetadataHeader readHeader(File file) throws IOException { in readHeader() method in BlockMetadataHeader 154 return readHeader(in); in readHeader() 165 public static BlockMetadataHeader readHeader(RandomAccessFile raf) throws IOException { in readHeader() method in BlockMetadataHeader 169 return readHeader(new DataInputStream(new ByteArrayInputStream(buf))); in readHeader() 173 private static BlockMetadataHeader readHeader(short version, DataInputStream in) in readHeader() method in BlockMetadataHeader
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/dports/devel/hadoop/hadoop-1.2.1/src/hdfs/org/apache/hadoop/hdfs/server/datanode/ |
H A D | BlockMetadataHeader.java | 74 public static BlockMetadataHeader readHeader(DataInputStream in) throws IOException { in readHeader() method in BlockMetadataHeader 75 return readHeader(in.readShort(), in); in readHeader() 86 static BlockMetadataHeader readHeader(File file) throws IOException { in readHeader() method in BlockMetadataHeader 91 return readHeader(in); in readHeader() 98 private static BlockMetadataHeader readHeader(short version, DataInputStream in) in readHeader() method in BlockMetadataHeader
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/dports/lang/perl5.30/perl-5.30.3/cpan/IO-Compress/lib/IO/Uncompress/ |
H A D | AnyUncompress.pm | 110 *$self->{Info} = $self->readHeader($magic) 138 *$self->{Info} = $self->readHeader($magic) 154 *$self->{Info} = $self->readHeader($magic) 170 *$self->{Info} = $self->readHeader($magic) 186 *$self->{Info} = $self->readHeader($magic) 202 *$self->{Info} = $self->readHeader($magic) 219 *$self->{Info} = $self->readHeader($magic)
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/dports/lang/perl5.32/perl-5.32.1/cpan/IO-Compress/lib/IO/Uncompress/ |
H A D | AnyUncompress.pm | 114 *$self->{Info} = $self->readHeader($magic) 142 *$self->{Info} = $self->readHeader($magic) 158 *$self->{Info} = $self->readHeader($magic) 174 *$self->{Info} = $self->readHeader($magic) 190 *$self->{Info} = $self->readHeader($magic) 206 *$self->{Info} = $self->readHeader($magic) 223 *$self->{Info} = $self->readHeader($magic)
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/dports/lang/perl5.34/perl-5.34.0/cpan/IO-Compress/lib/IO/Uncompress/ |
H A D | AnyUncompress.pm | 114 *$self->{Info} = $self->readHeader($magic) 142 *$self->{Info} = $self->readHeader($magic) 158 *$self->{Info} = $self->readHeader($magic) 174 *$self->{Info} = $self->readHeader($magic) 190 *$self->{Info} = $self->readHeader($magic) 206 *$self->{Info} = $self->readHeader($magic) 223 *$self->{Info} = $self->readHeader($magic)
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/dports/archivers/p5-IO-Compress/IO-Compress-2.101/lib/IO/Uncompress/ |
H A D | AnyUncompress.pm | 114 *$self->{Info} = $self->readHeader($magic) 142 *$self->{Info} = $self->readHeader($magic) 158 *$self->{Info} = $self->readHeader($magic) 174 *$self->{Info} = $self->readHeader($magic) 190 *$self->{Info} = $self->readHeader($magic) 206 *$self->{Info} = $self->readHeader($magic) 223 *$self->{Info} = $self->readHeader($magic)
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/dports/lang/perl5-devel/perl5-5.35.4-102-ge43d289c7c/cpan/IO-Compress/lib/IO/Uncompress/ |
H A D | AnyUncompress.pm | 114 *$self->{Info} = $self->readHeader($magic) 142 *$self->{Info} = $self->readHeader($magic) 158 *$self->{Info} = $self->readHeader($magic) 174 *$self->{Info} = $self->readHeader($magic) 190 *$self->{Info} = $self->readHeader($magic) 206 *$self->{Info} = $self->readHeader($magic) 223 *$self->{Info} = $self->readHeader($magic)
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/dports/games/bzflag-server/bzflag-2.4.22/src/mediafile/ |
H A D | WaveAudioFile.cxx | 35 if (!readHeader(tag, &length) || memcmp(tag, "RIFF", 4) != 0) in WaveAudioFile() 156 bool WaveAudioFile::readHeader(char* tag, uint32_t* length) in readHeader() function in WaveAudioFile 168 if (!readHeader(curtag, length)) in findChunk() 173 readHeader(curtag, length); in findChunk()
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/dports/games/bzflag/bzflag-2.4.22/src/mediafile/ |
H A D | WaveAudioFile.cxx | 35 if (!readHeader(tag, &length) || memcmp(tag, "RIFF", 4) != 0) in WaveAudioFile() 156 bool WaveAudioFile::readHeader(char* tag, uint32_t* length) in readHeader() function in WaveAudioFile 168 if (!readHeader(curtag, length)) in findChunk() 173 readHeader(curtag, length); in findChunk()
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/dports/security/xray-core/Xray-core-1.5.0/vendor/github.com/pires/go-proxyproto/ |
H A D | protocol.go | 108 p.readErr = p.readHeader() 129 p.once.Do(func() { p.readErr = p.readHeader() }) 140 p.once.Do(func() { p.readErr = p.readHeader() }) 155 p.once.Do(func() { p.readErr = p.readHeader() }) 213 func (p *Conn) readHeader() error { func 257 p.once.Do(func() { p.readErr = p.readHeader() })
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/dports/devel/gitlab-shell/gitlab-shell-65b8ec55bebd0aea64ac52b9878bafcc2ad992d3/vendor/github.com/pires/go-proxyproto/ |
H A D | protocol.go | 108 p.readErr = p.readHeader() 129 p.once.Do(func() { p.readErr = p.readHeader() }) 140 p.once.Do(func() { p.readErr = p.readHeader() }) 155 p.once.Do(func() { p.readErr = p.readHeader() }) 213 func (p *Conn) readHeader() error { func 257 p.once.Do(func() { p.readErr = p.readHeader() })
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/dports/net/v2ray/v2ray-core-4.36.2/vendor/github.com/pires/go-proxyproto/ |
H A D | protocol.go | 103 p.readErr = p.readHeader() 124 p.once.Do(func() { p.readErr = p.readHeader() }) 135 p.once.Do(func() { p.readErr = p.readHeader() }) 150 p.once.Do(func() { p.readErr = p.readHeader() }) 208 func (p *Conn) readHeader() error { func 252 p.once.Do(func() { p.readErr = p.readHeader() })
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/dports/java/openjdk8/jdk8u-jdk8u312-b07.1/jaxws/src/share/jaxws_classes/com/sun/xml/internal/ws/message/ |
H A D | AbstractHeaderImpl.java | 70 return (T)unmarshaller.unmarshal(readHeader()); in readAsJAXB() 78 return bridge.unmarshal(readHeader()); in readAsJAXB() 86 return bridge.unmarshal(readHeader(), null); in readAsJAXB() 96 XMLStreamReader xsr = readHeader(); in readAsEPR() 145 XMLStreamReader xsr = readHeader(); in getStringContent()
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/dports/java/openjdk8-jre/jdk8u-jdk8u312-b07.1/jaxws/src/share/jaxws_classes/com/sun/xml/internal/ws/message/ |
H A D | AbstractHeaderImpl.java | 70 return (T)unmarshaller.unmarshal(readHeader()); in readAsJAXB() 78 return bridge.unmarshal(readHeader()); in readAsJAXB() 86 return bridge.unmarshal(readHeader(), null); in readAsJAXB() 96 XMLStreamReader xsr = readHeader(); in readAsEPR() 145 XMLStreamReader xsr = readHeader(); in getStringContent()
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/dports/net-im/dendrite/dendrite-0.5.1/vendor/github.com/pressly/goose/vendor/github.com/ziutek/mymysql/native/ |
H A D | packet.go | 23 func (pr *pktReader) readHeader() { func 57 pr.readHeader() 79 pr.readHeader() 96 pr.readHeader() 117 pr.readHeader() 134 pr.readHeader()
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/dports/security/certmgr/certmgr-3.0.3/vendor/github.com/cloudflare/cfssl/cfssl-2001f384ec4f/vendor/github.com/ziutek/mymysql/native/ |
H A D | packet.go | 23 func (pr *pktReader) readHeader() { func 57 pr.readHeader() 79 pr.readHeader() 96 pr.readHeader() 117 pr.readHeader() 134 pr.readHeader()
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/dports/net/ooni-probe-cli/probe-cli-3.10.1/vendor/github.com/ziutek/mymysql/native/ |
H A D | packet.go | 23 func (pr *pktReader) readHeader() { func 57 pr.readHeader() 79 pr.readHeader() 96 pr.readHeader() 117 pr.readHeader() 134 pr.readHeader()
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/dports/multimedia/navidrome/navidrome-0.40.0/vendor/github.com/pressly/goose/vendor/github.com/ziutek/mymysql/native/ |
H A D | packet.go | 23 func (pr *pktReader) readHeader() { func 57 pr.readHeader() 79 pr.readHeader() 96 pr.readHeader() 117 pr.readHeader() 134 pr.readHeader()
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/dports/multimedia/navidrome/navidrome-0.40.0/vendor/github.com/ziutek/mymysql/native/ |
H A D | packet.go | 23 func (pr *pktReader) readHeader() { func 57 pr.readHeader() 79 pr.readHeader() 96 pr.readHeader() 117 pr.readHeader() 134 pr.readHeader()
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/dports/security/yapet/yapet-2.3/src/libs/crypt/ |
H A D | file.cc | 46 Header10 File::readHeader() { in readHeader() function in File 47 auto encryptedSerializedHeader{_yapetFile->readHeader()}; in readHeader() 65 auto encryptedSerializedHeader = _yapetFile->readHeader(); in validateExistingFile() 196 auto header{readHeader()}; in getMasterPWSet() 208 auto encryptedSerializedHeader{_yapetFile->readHeader()}; in getHeaderVersion()
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