| /dports/biology/plink/plink-ng-79b2df8c/2.0/ |
| H A D | plink2_common.cc | 2935 uint32_t read_block_idx = *read_block_idxp; in MultireadNonempty() local
2936 uint32_t offset = read_block_idx * read_block_size; in MultireadNonempty()
2939 for (; ; ++read_block_idx, offset += read_block_size) { in MultireadNonempty()
2942 …cur_block_write_ct = PopcountWords(&(variant_include[read_block_idx * read_block_sizel]), BitCtToW… in MultireadNonempty()
2946 …cur_block_write_ct = PopcountWords(&(variant_include[read_block_idx * read_block_sizel]), read_blo… in MultireadNonempty()
2951 *read_block_idxp = read_block_idx; in MultireadNonempty()
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| H A D | plink2_export.cc | 723 uint32_t read_block_idx = 0; variable
767 ++read_block_idx;
1863 uint32_t read_block_idx = 0; variable
1877 …adNonempty(variant_include, &tg, raw_variant_ct, read_block_size, pgfip, &read_block_idx, &reterr);
1894 …xStartPartition(variant_include, cur_block_write_ct, calc_thread_ct, read_block_idx * read_block_s…
1976 ++read_block_idx;
3485 uint32_t read_block_idx = 0; variable
3500 …adNonempty(variant_include, &tg, raw_variant_ct, read_block_size, pgfip, &read_block_idx, &reterr);
3626 ++read_block_idx;
9675 uint32_t read_block_idx = 0; variable
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| H A D | plink2_glm.cc | 5760 uint32_t read_block_idx = 0; in GlmLogistic() local
5786 const uint32_t uidx_start = read_block_idx * read_block_size; in GlmLogistic()
5810 const uint32_t uidx_start = read_block_idx * read_block_size; in GlmLogistic()
6266 ++read_block_idx; in GlmLogistic()
7926 uint32_t read_block_idx = 0; in GlmLinear() local
7953 const uint32_t uidx_start = read_block_idx * read_block_size; in GlmLinear()
7984 const uint32_t uidx_start = read_block_idx * read_block_size; in GlmLinear()
8372 ++read_block_idx; in GlmLinear()
10136 uint32_t read_block_idx = 0; in GlmLinearBatch() local
10169 const uint32_t uidx_start = read_block_idx * read_block_size; in GlmLinearBatch()
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| H A D | plink2_matrix_calc.cc | 1568 uint32_t read_block_idx = 0; in CalcKing() local
1573 …ariant_include_orig, &tg, raw_variant_ct, sparse_read_block_size, pgfip, &read_block_idx, &reterr); in CalcKing()
1584 …StartPartition(variant_include_orig, cur_block_size, calc_thread_ct, read_block_idx * sparse_read_… in CalcKing()
1610 prev_read_block_idx = read_block_idx; in CalcKing()
1611 ++read_block_idx; in CalcKing()
7728 uint32_t read_block_idx = 0; in Vscore() local
7734 for (uint32_t variant_idx = 0; ; ++read_block_idx) { in Vscore()
7735 …adNonempty(variant_include, &tg, raw_variant_ct, read_block_size, pgfip, &read_block_idx, &reterr); in Vscore()
7750 …ComputeUidxStartPartition(variant_include, cur_block_size, calc_thread_ct, read_block_idx * read_b… in Vscore()
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| H A D | plink2_data.cc | 2554 uint32_t read_block_idx = 0; variable
2557 …adNonempty(variant_include, &tg, raw_variant_ct, read_block_size, pgfip, &read_block_idx, &reterr);
2570 …ComputeUidxStartPartition(variant_include, cur_block_size, calc_thread_ct, read_block_idx * read_b…
2594 ++read_block_idx;
4971 uint32_t read_block_idx = 0; variable
4975 …adNonempty(variant_include, &tg, raw_variant_ct, read_block_size, pgfip, &read_block_idx, &reterr);
4990 …xStartPartition(variant_include, cur_block_write_ct, calc_thread_ct, read_block_idx * read_block_s…
5019 ++read_block_idx;
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| H A D | plink2_filter.cc | 3469 uint32_t read_block_idx = 0; in LoadSampleMissingCts() local
3472 …adNonempty(variant_include, &tg, raw_variant_ct, read_block_size, pgfip, &read_block_idx, &reterr); in LoadSampleMissingCts()
3485 …artPartition(variant_include, cur_loaded_variant_ct, calc_thread_ct, read_block_idx * read_block_s… in LoadSampleMissingCts()
3509 ++read_block_idx; in LoadSampleMissingCts()
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| H A D | plink2_misc.cc | 6675 uint32_t read_block_idx = 0; in SampleCounts() local
6678 …adNonempty(variant_include, &tg, raw_variant_ct, read_block_size, pgfip, &read_block_idx, &reterr); in SampleCounts()
6691 …ComputeUidxStartPartition(variant_include, cur_block_size, calc_thread_ct, read_block_idx * read_b… in SampleCounts()
6715 ++read_block_idx; in SampleCounts()
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