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Searched refs:read_in (Results 1 – 25 of 272) sorted by relevance

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/dports/www/mnogosearch/mnogosearch-3.4.1/
H A Dinstall.pl208 $temp=read_in();
358 $temp=read_in();
445 $temp=read_in();
483 $temp=read_in();
625 $temp=read_in();
654 $temp=read_in();
665 $temp=read_in();
676 $temp=read_in();
687 $temp=read_in();
698 $temp=read_in();
[all …]
/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/engine/filters/
H A DNotOpticalDuplicateReadFilterTest.java15 final GATKRead read_in = ArtificialReadUtils.createArtificialRead("*"); in testOpticalDuplicates() local
18 Assert.assertEquals(filter.test(read_in), true); in testOpticalDuplicates()
21 read_in.setAttribute(MarkDuplicatesSparkUtils.OPTICAL_DUPLICATE_TOTAL_ATTRIBUTE_NAME, 1); in testOpticalDuplicates()
22 Assert.assertEquals(filter.test(read_in), false); in testOpticalDuplicates()
25 read_in.setAttribute(MarkDuplicatesSparkUtils.OPTICAL_DUPLICATE_TOTAL_ATTRIBUTE_NAME, 2); in testOpticalDuplicates()
26 Assert.assertEquals(filter.test(read_in), false); in testOpticalDuplicates()
29 read_in.setAttribute(MarkDuplicatesSparkUtils.OPTICAL_DUPLICATE_TOTAL_ATTRIBUTE_NAME, 0); in testOpticalDuplicates()
30 Assert.assertEquals(filter.test(read_in), true); in testOpticalDuplicates()
H A DAmbiguousBaseReadFilterTest.java28 GATKRead read_in = ArtificialReadUtils.createArtificialRead(seq_in.getBytes(), qual, "*"); in testMaxBases() local
29 final boolean test_i = filter.test(read_in); in testMaxBases()
39 GATKRead read_in = ArtificialReadUtils.createArtificialRead(seq_in.getBytes(), qual, "*"); in testMaxFraction() local
40 final boolean test_i = filter.test(read_in); in testMaxFraction()
/dports/lang/zig-devel/zig-0.9.0/lib/libc/mingw/stdio/
H A Dmingw_vfscanf.c391 back_ch (c, s, &read_in, 0); in __mingw_sformat()
544 back_ch (c, s, &read_in, 0); in __mingw_sformat()
792 back_ch (c, s, &read_in, 1); in __mingw_sformat()
873 back_ch (c, s, &read_in, 1); in __mingw_sformat()
979 c = in_ch (s, &read_in); in __mingw_sformat()
988 c = in_ch (s, &read_in); in __mingw_sformat()
998 c = in_ch (s, &read_in); in __mingw_sformat()
1055 c = in_ch (s, &read_in); in __mingw_sformat()
1226 c = in_ch (s, &read_in); in __mingw_sformat()
1466 read_in_sv = read_in; in __mingw_sformat()
[all …]
H A Dmingw_wvfscanf.c380 back_ch (c, s, &read_in, 0); in __mingw_swformat()
532 back_ch (c, s, &read_in, 0); in __mingw_swformat()
763 back_ch (c, s, &read_in, 1); in __mingw_swformat()
877 back_ch (c, s, &read_in, 1); in __mingw_swformat()
963 c = in_ch (s, &read_in); in __mingw_swformat()
974 c = in_ch (s, &read_in); in __mingw_swformat()
984 c = in_ch (s, &read_in); in __mingw_swformat()
1015 c = in_ch (s, &read_in); in __mingw_swformat()
1186 c = in_ch (s, &read_in); in __mingw_swformat()
1372 read_in_sv = read_in; in __mingw_swformat()
[all …]
/dports/lang/zig/zig-0.9.0/lib/libc/mingw/stdio/
H A Dmingw_vfscanf.c391 back_ch (c, s, &read_in, 0); in __mingw_sformat()
544 back_ch (c, s, &read_in, 0); in __mingw_sformat()
792 back_ch (c, s, &read_in, 1); in __mingw_sformat()
873 back_ch (c, s, &read_in, 1); in __mingw_sformat()
979 c = in_ch (s, &read_in); in __mingw_sformat()
988 c = in_ch (s, &read_in); in __mingw_sformat()
998 c = in_ch (s, &read_in); in __mingw_sformat()
1055 c = in_ch (s, &read_in); in __mingw_sformat()
1226 c = in_ch (s, &read_in); in __mingw_sformat()
1466 read_in_sv = read_in; in __mingw_sformat()
[all …]
H A Dmingw_wvfscanf.c380 back_ch (c, s, &read_in, 0); in __mingw_swformat()
532 back_ch (c, s, &read_in, 0); in __mingw_swformat()
763 back_ch (c, s, &read_in, 1); in __mingw_swformat()
877 back_ch (c, s, &read_in, 1); in __mingw_swformat()
963 c = in_ch (s, &read_in); in __mingw_swformat()
974 c = in_ch (s, &read_in); in __mingw_swformat()
984 c = in_ch (s, &read_in); in __mingw_swformat()
1015 c = in_ch (s, &read_in); in __mingw_swformat()
1186 c = in_ch (s, &read_in); in __mingw_swformat()
1372 read_in_sv = read_in; in __mingw_swformat()
[all …]
/dports/math/vtk8/VTK-8.2.0/IO/XML/Testing/Cxx/
H A DTestXMLHyperTreeGridIO.cxx46 vtkHyperTreeGrid *read_in = reader->GetOutput(); in TestXMLHyperTreeGridIO() local
53 read_in->GetGridSize(size); in TestXMLHyperTreeGridIO()
55 read1 +="DIMS "+std::to_string(read_in->GetDimension())+"\n"; in TestXMLHyperTreeGridIO()
56 read1 +="#TREES "+std::to_string(read_in->GetNumberOfTrees())+"\n"; in TestXMLHyperTreeGridIO()
57 read1 +="ORIENTATION "+std::to_string(read_in->GetOrientation())+"\n"; in TestXMLHyperTreeGridIO()
59 coords = read_in->GetXCoordinates(); in TestXMLHyperTreeGridIO()
62 coords = read_in->GetYCoordinates(); in TestXMLHyperTreeGridIO()
65 coords = read_in->GetZCoordinates(); in TestXMLHyperTreeGridIO()
70 read1 +="#LEVELS "+std::to_string(read_in->GetNumberOfLevels())+"\n"; in TestXMLHyperTreeGridIO()
73 read1 +="#CELLS "+std::to_string(read_in->GetNumberOfCells())+"\n"; in TestXMLHyperTreeGridIO()
[all …]
/dports/devel/isa-l/isa-l-2.30.0/igzip/
H A Digzip_decode_block_stateless.asm118 %define read_in r9
238 %define %%read_in %3
244 or %%read_in, %%tmp1
260 %define %%read_in %3
370 SHRX %%read_in, %%read_in, rcx
435 SHRX %%read_in, %%read_in, rcx
500 mov tmp3, read_in
525 and tmp3, read_in
530 or read_in, tmp1
572 SHRX read_in, read_in, rcx
[all …]
H A Digzip_inflate.c977 state->read_in = 0; in header_matches_pregen()
987 state->read_in = 0; in header_matches_pregen()
1495 state->read_in >>= 16; in read_header()
1599 state->read_in = 0; in decode_literal_block()
1790 state->read_in = 0; in isal_inflate_init()
1816 state->read_in = 0; in isal_inflate_reset()
1943 state->read_in = 0; in check_gzip_checksum()
1951 state->read_in = 0; in check_gzip_checksum()
2002 state->read_in = 0; in check_zlib_checksum()
2219 state->read_in = 0; in isal_inflate_stateless()
[all …]
/dports/math/vtk9/VTK-9.1.0/IO/XML/Testing/Cxx/
H A DTestXMLHyperTreeGridIO.cxx46 vtkHyperTreeGrid* read_in = reader->GetOutput(); in TestXMLHyperTreeGridIO() local
53 read_in->GetDimensions(size); in TestXMLHyperTreeGridIO()
56 read1 += "DIMS " + std::to_string(read_in->GetDimension()) + "\n"; in TestXMLHyperTreeGridIO()
57 read1 += "#TREES " + std::to_string(read_in->GetMaxNumberOfTrees()) + "\n"; in TestXMLHyperTreeGridIO()
58 read1 += "ORIENTATION " + std::to_string(read_in->GetOrientation()) + "\n"; in TestXMLHyperTreeGridIO()
60 coords = read_in->GetXCoordinates(); in TestXMLHyperTreeGridIO()
64 coords = read_in->GetYCoordinates(); in TestXMLHyperTreeGridIO()
68 coords = read_in->GetZCoordinates(); in TestXMLHyperTreeGridIO()
74 read1 += "#LEVELS " + std::to_string(read_in->GetNumberOfLevels()) + "\n"; in TestXMLHyperTreeGridIO()
76 read1 += "#LEAVES " + std::to_string(read_in->GetNumberOfLeaves()) + "\n"; in TestXMLHyperTreeGridIO()
[all …]
/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/spark/pathseq/
H A DMarkedOpticalDuplicateReadFilterTest.java16 final GATKRead read_in = ArtificialReadUtils.createArtificialRead("*"); in testTest() local
17 Assert.assertEquals(filter.test(read_in),true); in testTest()
19 read_in.setAttribute(MarkDuplicatesSparkUtils.OPTICAL_DUPLICATE_TOTAL_ATTRIBUTE_NAME,1); in testTest()
20 Assert.assertEquals(filter.test(read_in),false); in testTest()
22 read_in.setAttribute(MarkDuplicatesSparkUtils.OPTICAL_DUPLICATE_TOTAL_ATTRIBUTE_NAME,0); in testTest()
23 Assert.assertEquals(filter.test(read_in),true); in testTest()
H A DHostAlignmentReadFilterTest.java58 final GATKRead read_in = ArtificialReadUtils.createArtificialRead(cigar); in testMappedRead() local
59 read_in.setAttribute("NM", NM); in testMappedRead()
60 read_in.setPosition("pos", 1); in testMappedRead()
61 final boolean test_i = filter.test(read_in); in testMappedRead()
72 final GATKRead read_in = ArtificialReadUtils.createArtificialRead(bases, qual, "*"); in testUnmappedRead() local
73 read_in.setIsUnmapped(); in testUnmappedRead()
74 final boolean test_i = filter.test(read_in); in testUnmappedRead()
121 final GATKRead read_in = ArtificialReadUtils.createArtificialRead(cigar); in testMappedReadWithoutNMTag() local
122 read_in.setPosition("pos", 1); in testMappedReadWithoutNMTag()
123 final boolean test_i = filter.test(read_in); in testMappedReadWithoutNMTag()
/dports/sysutils/sg3_utils/sg3_utils-1.42/src/
H A Dsg_wr_mode.c319 unsigned char read_in[MX_ALLOC_LEN]; in main() local
337 memset(read_in, 0, sizeof(read_in)); in main()
338 if (0 != build_mode_page(optarg, read_in, &read_in_len, in main()
339 sizeof(read_in))) { in main()
502 read_in[k] = ref_md[off + k]; in main()
505 read_in[k] = (c | (read_in[k] & mask_in[k])); in main()
522 if (pg_code != (read_in[0] & 0x3f)) { in main()
527 if ((read_in[0] & 0x40) != (ref_md[off] & 0x40)) { in main()
532 if ((read_in[0] & 0x40) && (read_in[1] != sub_pg_code)) { in main()
534 "sub_page_code=0x%x\n", read_in[1], sub_pg_code); in main()
[all …]
/dports/devel/isa-l/isa-l-2.30.0/igzip/aarch64/
H A Digzip_decode_huffman_code_block_aarch64.S209 orr read_in,read_in,temp
241 orr read_in,read_in,temp
272 declare_generic_reg read_in, 3,x
320 ldp next_in, read_in, [state,_next_in]
371 lsr read_in,read_in,x_bit_count
385 and x_next_bits,read_in,x_bit_mask
393 lsr read_in,read_in,x_bit_count
473 and x_next_bits,read_in,x_bit_mask
484 lsr read_in,read_in,x_bit_count
513 and x_look_back_dist,temp,read_in
[all …]
/dports/graphics/filmulator/filmulator-gui-0.11.1/filmulator-gui/core/
H A DimreadJpeg.cpp51 float read_in; //Contains a 0 to 1 value from the jpeg in imread_jpeg() local
60 read_in = float(row_pointer[0][col*num_chan + channel])/255; in imread_jpeg()
63 if( read_in < 0.04045) in imread_jpeg()
66 read_in*5072.36842105; //(2^16 -1)/12.92 in imread_jpeg()
71 65535*pow((read_in+0.055)/1.055, 2.4); in imread_jpeg()
/dports/emulators/yuzu/yuzu-0b47f7a46/src/core/file_sys/
H A Dvfs_concat.cpp125 const auto read_in = in Read() local
127 if (length > read_in) { in Read()
128 return entry->second->Read(data, read_in, offset - entry->first) + in Read()
129 Read(data + read_in, length - read_in, offset + read_in); in Read()
132 return entry->second->Read(data, std::min<u64>(read_in, length), offset - entry->first); in Read()
/dports/security/py-certbot/certbot-1.22.0/tests/
H A Dreverter_test.py101 self.assertEqual(read_in(self.config1), "directive-dir1")
276 self.assertEqual(read_in(self.config1), "directive-dir1")
277 self.assertEqual(read_in(self.config2), "directive-dir2")
317 self.assertEqual(read_in(self.config1), "update config1")
318 self.assertEqual(read_in(self.config2), "update config2")
320 self.assertEqual(read_in(config3), "Final form config3")
324 self.assertEqual(read_in(self.config1), "update config1")
428 return read_in(os.path.join(dire, "CHANGES_SINCE"))
433 return read_in(os.path.join(dire, "FILEPATHS"))
438 return read_in(os.path.join(dire, "NEW_FILES")).splitlines()
[all …]
/dports/devel/fpc-fcl-res/fpc-3.2.2/packages/fcl-res/src/
H A Dgroupresource.pp236 var toread,read_in,delta : longint;
246 read_in:=ReadFromSubStream(fHeader,b^,fPosition,toread);
247 inc(fPosition,read_in);
248 inc(b,read_in);
249 inc(Result,read_in);
250 dec(toread,read_in);
256 read_in:=ReadFromSubStream(TStream(fStreams[i]),b^,fPosition-delta,toread);
257 inc(fPosition,read_in);
258 inc(b,read_in);
259 inc(Result,read_in);
[all …]
H A Dbitmapresource.pp163 var toread,read_in : longint;
172 read_in:=ReadFromSubStream(fHeader,b^,fPosition,toread);
173 inc(fPosition,read_in);
174 inc(b,read_in);
175 inc(Result,read_in);
176 dec(toread,read_in);
178 read_in:=ReadFromSubStream(fStream,b^,fPosition-hdrsize,toread);
179 inc(fPosition,read_in);
180 inc(Result,read_in);
/dports/lang/fpc/fpc-3.2.2/packages/fcl-res/src/
H A Dgroupresource.pp236 var toread,read_in,delta : longint;
246 read_in:=ReadFromSubStream(fHeader,b^,fPosition,toread);
247 inc(fPosition,read_in);
248 inc(b,read_in);
249 inc(Result,read_in);
250 dec(toread,read_in);
256 read_in:=ReadFromSubStream(TStream(fStreams[i]),b^,fPosition-delta,toread);
257 inc(fPosition,read_in);
258 inc(b,read_in);
259 inc(Result,read_in);
[all …]
H A Dbitmapresource.pp163 var toread,read_in : longint;
172 read_in:=ReadFromSubStream(fHeader,b^,fPosition,toread);
173 inc(fPosition,read_in);
174 inc(b,read_in);
175 inc(Result,read_in);
176 dec(toread,read_in);
178 read_in:=ReadFromSubStream(fStream,b^,fPosition-hdrsize,toread);
179 inc(fPosition,read_in);
180 inc(Result,read_in);
/dports/lang/fpc-source/fpc-3.2.2/packages/fcl-res/src/
H A Dgroupresource.pp236 var toread,read_in,delta : longint;
246 read_in:=ReadFromSubStream(fHeader,b^,fPosition,toread);
247 inc(fPosition,read_in);
248 inc(b,read_in);
249 inc(Result,read_in);
250 dec(toread,read_in);
256 read_in:=ReadFromSubStream(TStream(fStreams[i]),b^,fPosition-delta,toread);
257 inc(fPosition,read_in);
258 inc(b,read_in);
259 inc(Result,read_in);
[all …]
H A Dbitmapresource.pp163 var toread,read_in : longint;
172 read_in:=ReadFromSubStream(fHeader,b^,fPosition,toread);
173 inc(fPosition,read_in);
174 inc(b,read_in);
175 inc(Result,read_in);
176 dec(toread,read_in);
178 read_in:=ReadFromSubStream(fStream,b^,fPosition-hdrsize,toread);
179 inc(fPosition,read_in);
180 inc(Result,read_in);
/dports/converters/wkhtmltopdf/qt-5db36ec/tools/porting/src/
H A Dproparser.cpp176 int read_in = int(fread( buff, 1, 255, proc )); in proFileTagMap() local
177 if ( !read_in ) in proFileTagMap()
179 for ( int i = 0; i < read_in; i++ ) { in proFileTagMap()
183 buff[read_in] = '\0'; in proFileTagMap()

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