/dports/www/mnogosearch/mnogosearch-3.4.1/ |
H A D | install.pl | 208 $temp=read_in(); 358 $temp=read_in(); 445 $temp=read_in(); 483 $temp=read_in(); 625 $temp=read_in(); 654 $temp=read_in(); 665 $temp=read_in(); 676 $temp=read_in(); 687 $temp=read_in(); 698 $temp=read_in(); [all …]
|
/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/engine/filters/ |
H A D | NotOpticalDuplicateReadFilterTest.java | 15 final GATKRead read_in = ArtificialReadUtils.createArtificialRead("*"); in testOpticalDuplicates() local 18 Assert.assertEquals(filter.test(read_in), true); in testOpticalDuplicates() 21 read_in.setAttribute(MarkDuplicatesSparkUtils.OPTICAL_DUPLICATE_TOTAL_ATTRIBUTE_NAME, 1); in testOpticalDuplicates() 22 Assert.assertEquals(filter.test(read_in), false); in testOpticalDuplicates() 25 read_in.setAttribute(MarkDuplicatesSparkUtils.OPTICAL_DUPLICATE_TOTAL_ATTRIBUTE_NAME, 2); in testOpticalDuplicates() 26 Assert.assertEquals(filter.test(read_in), false); in testOpticalDuplicates() 29 read_in.setAttribute(MarkDuplicatesSparkUtils.OPTICAL_DUPLICATE_TOTAL_ATTRIBUTE_NAME, 0); in testOpticalDuplicates() 30 Assert.assertEquals(filter.test(read_in), true); in testOpticalDuplicates()
|
H A D | AmbiguousBaseReadFilterTest.java | 28 GATKRead read_in = ArtificialReadUtils.createArtificialRead(seq_in.getBytes(), qual, "*"); in testMaxBases() local 29 final boolean test_i = filter.test(read_in); in testMaxBases() 39 GATKRead read_in = ArtificialReadUtils.createArtificialRead(seq_in.getBytes(), qual, "*"); in testMaxFraction() local 40 final boolean test_i = filter.test(read_in); in testMaxFraction()
|
/dports/lang/zig-devel/zig-0.9.0/lib/libc/mingw/stdio/ |
H A D | mingw_vfscanf.c | 391 back_ch (c, s, &read_in, 0); in __mingw_sformat() 544 back_ch (c, s, &read_in, 0); in __mingw_sformat() 792 back_ch (c, s, &read_in, 1); in __mingw_sformat() 873 back_ch (c, s, &read_in, 1); in __mingw_sformat() 979 c = in_ch (s, &read_in); in __mingw_sformat() 988 c = in_ch (s, &read_in); in __mingw_sformat() 998 c = in_ch (s, &read_in); in __mingw_sformat() 1055 c = in_ch (s, &read_in); in __mingw_sformat() 1226 c = in_ch (s, &read_in); in __mingw_sformat() 1466 read_in_sv = read_in; in __mingw_sformat() [all …]
|
H A D | mingw_wvfscanf.c | 380 back_ch (c, s, &read_in, 0); in __mingw_swformat() 532 back_ch (c, s, &read_in, 0); in __mingw_swformat() 763 back_ch (c, s, &read_in, 1); in __mingw_swformat() 877 back_ch (c, s, &read_in, 1); in __mingw_swformat() 963 c = in_ch (s, &read_in); in __mingw_swformat() 974 c = in_ch (s, &read_in); in __mingw_swformat() 984 c = in_ch (s, &read_in); in __mingw_swformat() 1015 c = in_ch (s, &read_in); in __mingw_swformat() 1186 c = in_ch (s, &read_in); in __mingw_swformat() 1372 read_in_sv = read_in; in __mingw_swformat() [all …]
|
/dports/lang/zig/zig-0.9.0/lib/libc/mingw/stdio/ |
H A D | mingw_vfscanf.c | 391 back_ch (c, s, &read_in, 0); in __mingw_sformat() 544 back_ch (c, s, &read_in, 0); in __mingw_sformat() 792 back_ch (c, s, &read_in, 1); in __mingw_sformat() 873 back_ch (c, s, &read_in, 1); in __mingw_sformat() 979 c = in_ch (s, &read_in); in __mingw_sformat() 988 c = in_ch (s, &read_in); in __mingw_sformat() 998 c = in_ch (s, &read_in); in __mingw_sformat() 1055 c = in_ch (s, &read_in); in __mingw_sformat() 1226 c = in_ch (s, &read_in); in __mingw_sformat() 1466 read_in_sv = read_in; in __mingw_sformat() [all …]
|
H A D | mingw_wvfscanf.c | 380 back_ch (c, s, &read_in, 0); in __mingw_swformat() 532 back_ch (c, s, &read_in, 0); in __mingw_swformat() 763 back_ch (c, s, &read_in, 1); in __mingw_swformat() 877 back_ch (c, s, &read_in, 1); in __mingw_swformat() 963 c = in_ch (s, &read_in); in __mingw_swformat() 974 c = in_ch (s, &read_in); in __mingw_swformat() 984 c = in_ch (s, &read_in); in __mingw_swformat() 1015 c = in_ch (s, &read_in); in __mingw_swformat() 1186 c = in_ch (s, &read_in); in __mingw_swformat() 1372 read_in_sv = read_in; in __mingw_swformat() [all …]
|
/dports/math/vtk8/VTK-8.2.0/IO/XML/Testing/Cxx/ |
H A D | TestXMLHyperTreeGridIO.cxx | 46 vtkHyperTreeGrid *read_in = reader->GetOutput(); in TestXMLHyperTreeGridIO() local 53 read_in->GetGridSize(size); in TestXMLHyperTreeGridIO() 55 read1 +="DIMS "+std::to_string(read_in->GetDimension())+"\n"; in TestXMLHyperTreeGridIO() 56 read1 +="#TREES "+std::to_string(read_in->GetNumberOfTrees())+"\n"; in TestXMLHyperTreeGridIO() 57 read1 +="ORIENTATION "+std::to_string(read_in->GetOrientation())+"\n"; in TestXMLHyperTreeGridIO() 59 coords = read_in->GetXCoordinates(); in TestXMLHyperTreeGridIO() 62 coords = read_in->GetYCoordinates(); in TestXMLHyperTreeGridIO() 65 coords = read_in->GetZCoordinates(); in TestXMLHyperTreeGridIO() 70 read1 +="#LEVELS "+std::to_string(read_in->GetNumberOfLevels())+"\n"; in TestXMLHyperTreeGridIO() 73 read1 +="#CELLS "+std::to_string(read_in->GetNumberOfCells())+"\n"; in TestXMLHyperTreeGridIO() [all …]
|
/dports/devel/isa-l/isa-l-2.30.0/igzip/ |
H A D | igzip_decode_block_stateless.asm | 118 %define read_in r9 238 %define %%read_in %3 244 or %%read_in, %%tmp1 260 %define %%read_in %3 370 SHRX %%read_in, %%read_in, rcx 435 SHRX %%read_in, %%read_in, rcx 500 mov tmp3, read_in 525 and tmp3, read_in 530 or read_in, tmp1 572 SHRX read_in, read_in, rcx [all …]
|
H A D | igzip_inflate.c | 977 state->read_in = 0; in header_matches_pregen() 987 state->read_in = 0; in header_matches_pregen() 1495 state->read_in >>= 16; in read_header() 1599 state->read_in = 0; in decode_literal_block() 1790 state->read_in = 0; in isal_inflate_init() 1816 state->read_in = 0; in isal_inflate_reset() 1943 state->read_in = 0; in check_gzip_checksum() 1951 state->read_in = 0; in check_gzip_checksum() 2002 state->read_in = 0; in check_zlib_checksum() 2219 state->read_in = 0; in isal_inflate_stateless() [all …]
|
/dports/math/vtk9/VTK-9.1.0/IO/XML/Testing/Cxx/ |
H A D | TestXMLHyperTreeGridIO.cxx | 46 vtkHyperTreeGrid* read_in = reader->GetOutput(); in TestXMLHyperTreeGridIO() local 53 read_in->GetDimensions(size); in TestXMLHyperTreeGridIO() 56 read1 += "DIMS " + std::to_string(read_in->GetDimension()) + "\n"; in TestXMLHyperTreeGridIO() 57 read1 += "#TREES " + std::to_string(read_in->GetMaxNumberOfTrees()) + "\n"; in TestXMLHyperTreeGridIO() 58 read1 += "ORIENTATION " + std::to_string(read_in->GetOrientation()) + "\n"; in TestXMLHyperTreeGridIO() 60 coords = read_in->GetXCoordinates(); in TestXMLHyperTreeGridIO() 64 coords = read_in->GetYCoordinates(); in TestXMLHyperTreeGridIO() 68 coords = read_in->GetZCoordinates(); in TestXMLHyperTreeGridIO() 74 read1 += "#LEVELS " + std::to_string(read_in->GetNumberOfLevels()) + "\n"; in TestXMLHyperTreeGridIO() 76 read1 += "#LEAVES " + std::to_string(read_in->GetNumberOfLeaves()) + "\n"; in TestXMLHyperTreeGridIO() [all …]
|
/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/spark/pathseq/ |
H A D | MarkedOpticalDuplicateReadFilterTest.java | 16 final GATKRead read_in = ArtificialReadUtils.createArtificialRead("*"); in testTest() local 17 Assert.assertEquals(filter.test(read_in),true); in testTest() 19 read_in.setAttribute(MarkDuplicatesSparkUtils.OPTICAL_DUPLICATE_TOTAL_ATTRIBUTE_NAME,1); in testTest() 20 Assert.assertEquals(filter.test(read_in),false); in testTest() 22 read_in.setAttribute(MarkDuplicatesSparkUtils.OPTICAL_DUPLICATE_TOTAL_ATTRIBUTE_NAME,0); in testTest() 23 Assert.assertEquals(filter.test(read_in),true); in testTest()
|
H A D | HostAlignmentReadFilterTest.java | 58 final GATKRead read_in = ArtificialReadUtils.createArtificialRead(cigar); in testMappedRead() local 59 read_in.setAttribute("NM", NM); in testMappedRead() 60 read_in.setPosition("pos", 1); in testMappedRead() 61 final boolean test_i = filter.test(read_in); in testMappedRead() 72 final GATKRead read_in = ArtificialReadUtils.createArtificialRead(bases, qual, "*"); in testUnmappedRead() local 73 read_in.setIsUnmapped(); in testUnmappedRead() 74 final boolean test_i = filter.test(read_in); in testUnmappedRead() 121 final GATKRead read_in = ArtificialReadUtils.createArtificialRead(cigar); in testMappedReadWithoutNMTag() local 122 read_in.setPosition("pos", 1); in testMappedReadWithoutNMTag() 123 final boolean test_i = filter.test(read_in); in testMappedReadWithoutNMTag()
|
/dports/sysutils/sg3_utils/sg3_utils-1.42/src/ |
H A D | sg_wr_mode.c | 319 unsigned char read_in[MX_ALLOC_LEN]; in main() local 337 memset(read_in, 0, sizeof(read_in)); in main() 338 if (0 != build_mode_page(optarg, read_in, &read_in_len, in main() 339 sizeof(read_in))) { in main() 502 read_in[k] = ref_md[off + k]; in main() 505 read_in[k] = (c | (read_in[k] & mask_in[k])); in main() 522 if (pg_code != (read_in[0] & 0x3f)) { in main() 527 if ((read_in[0] & 0x40) != (ref_md[off] & 0x40)) { in main() 532 if ((read_in[0] & 0x40) && (read_in[1] != sub_pg_code)) { in main() 534 "sub_page_code=0x%x\n", read_in[1], sub_pg_code); in main() [all …]
|
/dports/devel/isa-l/isa-l-2.30.0/igzip/aarch64/ |
H A D | igzip_decode_huffman_code_block_aarch64.S | 209 orr read_in,read_in,temp 241 orr read_in,read_in,temp 272 declare_generic_reg read_in, 3,x 320 ldp next_in, read_in, [state,_next_in] 371 lsr read_in,read_in,x_bit_count 385 and x_next_bits,read_in,x_bit_mask 393 lsr read_in,read_in,x_bit_count 473 and x_next_bits,read_in,x_bit_mask 484 lsr read_in,read_in,x_bit_count 513 and x_look_back_dist,temp,read_in [all …]
|
/dports/graphics/filmulator/filmulator-gui-0.11.1/filmulator-gui/core/ |
H A D | imreadJpeg.cpp | 51 float read_in; //Contains a 0 to 1 value from the jpeg in imread_jpeg() local 60 read_in = float(row_pointer[0][col*num_chan + channel])/255; in imread_jpeg() 63 if( read_in < 0.04045) in imread_jpeg() 66 read_in*5072.36842105; //(2^16 -1)/12.92 in imread_jpeg() 71 65535*pow((read_in+0.055)/1.055, 2.4); in imread_jpeg()
|
/dports/emulators/yuzu/yuzu-0b47f7a46/src/core/file_sys/ |
H A D | vfs_concat.cpp | 125 const auto read_in = in Read() local 127 if (length > read_in) { in Read() 128 return entry->second->Read(data, read_in, offset - entry->first) + in Read() 129 Read(data + read_in, length - read_in, offset + read_in); in Read() 132 return entry->second->Read(data, std::min<u64>(read_in, length), offset - entry->first); in Read()
|
/dports/security/py-certbot/certbot-1.22.0/tests/ |
H A D | reverter_test.py | 101 self.assertEqual(read_in(self.config1), "directive-dir1") 276 self.assertEqual(read_in(self.config1), "directive-dir1") 277 self.assertEqual(read_in(self.config2), "directive-dir2") 317 self.assertEqual(read_in(self.config1), "update config1") 318 self.assertEqual(read_in(self.config2), "update config2") 320 self.assertEqual(read_in(config3), "Final form config3") 324 self.assertEqual(read_in(self.config1), "update config1") 428 return read_in(os.path.join(dire, "CHANGES_SINCE")) 433 return read_in(os.path.join(dire, "FILEPATHS")) 438 return read_in(os.path.join(dire, "NEW_FILES")).splitlines() [all …]
|
/dports/devel/fpc-fcl-res/fpc-3.2.2/packages/fcl-res/src/ |
H A D | groupresource.pp | 236 var toread,read_in,delta : longint; 246 read_in:=ReadFromSubStream(fHeader,b^,fPosition,toread); 247 inc(fPosition,read_in); 248 inc(b,read_in); 249 inc(Result,read_in); 250 dec(toread,read_in); 256 read_in:=ReadFromSubStream(TStream(fStreams[i]),b^,fPosition-delta,toread); 257 inc(fPosition,read_in); 258 inc(b,read_in); 259 inc(Result,read_in); [all …]
|
H A D | bitmapresource.pp | 163 var toread,read_in : longint; 172 read_in:=ReadFromSubStream(fHeader,b^,fPosition,toread); 173 inc(fPosition,read_in); 174 inc(b,read_in); 175 inc(Result,read_in); 176 dec(toread,read_in); 178 read_in:=ReadFromSubStream(fStream,b^,fPosition-hdrsize,toread); 179 inc(fPosition,read_in); 180 inc(Result,read_in);
|
/dports/lang/fpc/fpc-3.2.2/packages/fcl-res/src/ |
H A D | groupresource.pp | 236 var toread,read_in,delta : longint; 246 read_in:=ReadFromSubStream(fHeader,b^,fPosition,toread); 247 inc(fPosition,read_in); 248 inc(b,read_in); 249 inc(Result,read_in); 250 dec(toread,read_in); 256 read_in:=ReadFromSubStream(TStream(fStreams[i]),b^,fPosition-delta,toread); 257 inc(fPosition,read_in); 258 inc(b,read_in); 259 inc(Result,read_in); [all …]
|
H A D | bitmapresource.pp | 163 var toread,read_in : longint; 172 read_in:=ReadFromSubStream(fHeader,b^,fPosition,toread); 173 inc(fPosition,read_in); 174 inc(b,read_in); 175 inc(Result,read_in); 176 dec(toread,read_in); 178 read_in:=ReadFromSubStream(fStream,b^,fPosition-hdrsize,toread); 179 inc(fPosition,read_in); 180 inc(Result,read_in);
|
/dports/lang/fpc-source/fpc-3.2.2/packages/fcl-res/src/ |
H A D | groupresource.pp | 236 var toread,read_in,delta : longint; 246 read_in:=ReadFromSubStream(fHeader,b^,fPosition,toread); 247 inc(fPosition,read_in); 248 inc(b,read_in); 249 inc(Result,read_in); 250 dec(toread,read_in); 256 read_in:=ReadFromSubStream(TStream(fStreams[i]),b^,fPosition-delta,toread); 257 inc(fPosition,read_in); 258 inc(b,read_in); 259 inc(Result,read_in); [all …]
|
H A D | bitmapresource.pp | 163 var toread,read_in : longint; 172 read_in:=ReadFromSubStream(fHeader,b^,fPosition,toread); 173 inc(fPosition,read_in); 174 inc(b,read_in); 175 inc(Result,read_in); 176 dec(toread,read_in); 178 read_in:=ReadFromSubStream(fStream,b^,fPosition-hdrsize,toread); 179 inc(fPosition,read_in); 180 inc(Result,read_in);
|
/dports/converters/wkhtmltopdf/qt-5db36ec/tools/porting/src/ |
H A D | proparser.cpp | 176 int read_in = int(fread( buff, 1, 255, proc )); in proFileTagMap() local 177 if ( !read_in ) in proFileTagMap() 179 for ( int i = 0; i < read_in; i++ ) { in proFileTagMap() 183 buff[read_in] = '\0'; in proFileTagMap()
|