Searched refs:readdb_get_sequence (Results 1 – 11 of 11) sorted by relevance
| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | pseed3.c | 758 lenSeqFromDb = readdb_get_sequence(localSeedParallel->rdpt, in parallel_seed_search()
780 lenSeqFromDb = readdb_get_sequence(localSeedParallel->rdpt, in parallel_seed_search()
1261 lenDbSequence = readdb_get_sequence(rdpt, oneMatch->seqno, in output_hits()
1647 len = readdb_get_sequence(rdpt, seqno, &seq); in search_pat()
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| H A D | readdb.h | 1317 Int4 LIBCALL readdb_get_sequence PROTO((ReadDBFILEPtr rdfp, Int4 sequence_number, Uint1Ptr PNTR buf…
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| H A D | kappa.c | 1409 seqData->length = readdb_get_sequence(local_data->rdfp, self->index, in Kappa_SequenceGetProteinRange()
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| H A D | rpsutil.c | 579 rpsp->seqlen = readdb_get_sequence (rpsinfo->rdfp, seqnum, in RPSGetSequenceEx()
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| H A D | readdb.c | 5771 if((length = readdb_get_sequence(rdfp, sequence_number, &buffer)) < 1) in readdb_get_bioseq_ex()
5949 readdb_get_sequence (ReadDBFILEPtr rdfp, Int4 sequence_number, Uint1Ptr PNTR buffer) in readdb_get_sequence() function
6053 length = readdb_get_sequence(rdfp, sequence_number, &readdb_buffer); in readdb_get_sequence_ex()
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| H A D | blastutl.c | 8205 …subject_length = readdb_get_sequence(search->rdfp, result_hitlist->subject_id, (Uint1Ptr PNTR) &su… in BlastGetGapAlgnTbckWithReaddb()
10157 subject_length = readdb_get_sequence(search->rdfp, sequence_number, &subject); in BlastGetGappedScoreWithReaddb()
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| H A D | blastool.c | 4680 readdb_get_sequence(search->rdfp, search->subject_id, in BlastPrintAlignInfo()
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| H A D | blast.c | 6545 subject_length = readdb_get_sequence(search->rdfp, sequence_number, &subject_seq); in BLASTPerformSearchWithReadDb()
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| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | seedtop.c | 419 lenSeqFromDb = readdb_get_sequence(rdpt, num_seq, &seqFromDb); in Main()
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| H A D | blastclust.c | 685 subject_length = readdb_get_sequence(search->rdfp, search->subject_id, &subject); in PrintNeighbors()
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/api/ |
| H A D | seqsrc_readdb.c | 193 len = readdb_get_sequence(rdfp, oid, &buf); in s_ReaddbGetSequence()
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