Searched refs:ref_minus (Results 1 – 8 of 8) sorted by relevance
| /dports/science/bagel/bagel-1.2.2/src/grad/ |
| H A D | finite.cc | 82 shared_ptr<const Reference> ref_minus; in compute() local
84 ref_minus = ref_->project_coeff(geom_minus); in compute()
88 … tie(energy_minus, ref_minus) = get_energy(title, m, geom_minus, ref_minus, target_state_); in compute()
170 shared_ptr<const Reference> ref_minus; in compute() local
172 ref_minus = ref_->project_coeff(geom_minus); in compute()
175 tie(energy_minus, ref_minus) = get_energy("casscf", idata_, geom_minus, ref_minus); in compute()
176 acoeff_minus = make_shared<Matrix>(ref_minus->coeff()->slice(nclosed, nocc)); in compute()
182 civ_minus = ref_minus->civectors()->copy(); in compute()
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| H A D | hess.cc | 191 shared_ptr<const Reference> ref_minus; in compute_finite_diff_() local
193 ref_minus = ref_->project_coeff(geom_minus); in compute_finite_diff_()
195 auto minus = make_shared<Force>(idata_, geom_minus, ref_minus); in compute_finite_diff_()
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| /dports/science/bagel/bagel-1.2.2/src/smith/ |
| H A D | caspt2energy.cc | 192 shared_ptr<const Reference> ref_minus; in compute() local
194 ref_minus = ref_->project_coeff(geom_minus); in compute()
196 task_ = std::make_shared<CASPT2Energy>(idata_out, geom_minus, ref_minus); in compute()
198 ref_minus = task_->conv_to_ref(); in compute()
209 civ_minus = ref_minus->civectors()->copy(); in compute()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/sra/test/ |
| H A D | vdb_test.cpp | 1235 bool ref_minus = it.GetRefMinusStrand(); in Run() local
1245 << ref_pos << " " << ref_len << " " << ref_minus in Run()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/ |
| H A D | seq_map.cpp | 650 bool ref_minus) in SetSegmentRef() argument
654 x_SetSegmentRef(index, length, *ref_id.GetSeqId(), ref_pos, ref_minus); in SetSegmentRef()
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| H A D | annot_collector.cpp | 3240 bool ref_minus = ref_int.IsSetStrand()? in x_SearchRange() local
3249 if ( !ref_minus ) { in x_SearchRange()
3273 ref_minus, in x_SearchRange()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/ |
| H A D | seq_map.cpp | 650 bool ref_minus) in SetSegmentRef() argument
654 x_SetSegmentRef(index, length, *ref_id.GetSeqId(), ref_pos, ref_minus); in SetSegmentRef()
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| H A D | annot_collector.cpp | 3240 bool ref_minus = ref_int.IsSetStrand()? in x_SearchRange() local
3249 if ( !ref_minus ) { in x_SearchRange()
3273 ref_minus, in x_SearchRange()
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