Searched refs:ref_orientation (Results 1 – 15 of 15) sorted by relevance
72 bool ref_orientation; member122 self->algn.ref_orientation.buffer = &self->match.ref_orientation; in CGWriterEvdDnbs_Make()123 self->algn.ref_orientation.elements = 1; in CGWriterEvdDnbs_Make()214 self->match.ref_orientation = true; in CGWriterEvdDnbs_Write()216 self->match.ref_orientation = false; in CGWriterEvdDnbs_Write()
61 bool ref_orientation; member134 self->algn[i].ref_orientation.buffer = &self->match[i].ref_orientation; in CGWriterAlgn_Make()135 self->algn[i].ref_orientation.elements = 1; in CGWriterAlgn_Make()241 if (match->ref_orientation) { in CGWriterAlgn_Save()586 self->match[i].ref_orientation = (data->map[i].flags & cg_eRevDnbStrand) ? true : false; in CGWriterAlgn_Write_int()623 self->match[i].mate_ref_orientation = self->match[mate].ref_orientation; in CGWriterAlgn_Write_int()642 read->prim_is_reverse[0] = self->match[left_prime].ref_orientation; in CGWriterAlgn_Write_int()648 read->prim_is_reverse[1] = self->match[right_prime].ref_orientation; in CGWriterAlgn_Write_int()763 read->prim_is_reverse[0] = cself->match[left_prim].ref_orientation; in CGWriterAlgn_Write()768 read->prim_is_reverse[1] = cself->match[right_prim].ref_orientation; in CGWriterAlgn_Write()
61 bool ref_orientation; member101 self->match.ref_orientation = false; in CGWriterEvdInt_Make()102 self->algn.ref_orientation.buffer = &self->match.ref_orientation; in CGWriterEvdInt_Make()103 self->algn.ref_orientation.elements = 1; in CGWriterEvdInt_Make()
52 bool ref_orientation; member69 #define AR_REF_ORIENT(X) ((X).ref_orientation)
233 self->data.ref_orientation.buffer = &self->ref_orientation; in AlignmentRecordInit()234 self->data.ref_orientation.elements = 1; in AlignmentRecordInit()
236 self->data.ref_orientation.buffer = &self->ref_orientation; in AlignmentRecordInit()237 self->data.ref_orientation.elements = 1; in AlignmentRecordInit()
117 TableWriterData ref_orientation; member
161 * "ref_orientation" [ DATA ]164 INSDC:4na:bin NCBI:align:raw_restore_read #1 ( INSDC:4na:bin align_read, bool ref_orientation )173 * "ref_orientation" [ DATA ]176 …lity:phred NCBI:align:raw_restore_qual #1 ( INSDC:quality:phred align_qual, bool ref_orientation );
271 TW_COL_WRITE(cself->base, cself->cols[ewalgn_cn_REF_ORIENTATION], data->ref_orientation); in TableWriterAlgn_Write()