Searched refs:ref_ploidy (Results 1 – 10 of 10) sorted by relevance
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/ |
H A D | ref-tbl-sub-select.c | 60 uint32_t ref_ploidy, VRowResult* rslt); 102 uint32_t ref_ploidy, VRowResult* rslt ) in REFERENCE_TABLE_sub_select() argument 183 if ( rc == 0 && ref_ploidy != 0 ) in REFERENCE_TABLE_sub_select() 244 uint32_t ref_ploidy, VRowResult* rslt) in ALIGN_CMN_TABLE_sub_select() argument 301 assert( ref_ploidy > 0 && ref_ploidy <= rl_len ); in ALIGN_CMN_TABLE_sub_select() 310 if ( ( rl[ ref_ploidy - 1 ] - offset ) < left ) in ALIGN_CMN_TABLE_sub_select() 312 left = rl[ ref_ploidy - 1 ] - offset; in ALIGN_CMN_TABLE_sub_select() 469 const uint32_t* ref_ploidy = NULL; in reftbl_sub_select() local 473 ref_ploidy = ( const uint32_t* )argv[ 3 ].u.data.base; in reftbl_sub_select() 474 ref_ploidy += argv[3].u.data.first_elem; in reftbl_sub_select() [all …]
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/axf/ |
H A D | ref-tbl-sub-select.c | 60 uint32_t ref_ploidy, VRowResult* rslt); 102 uint32_t ref_ploidy, VRowResult* rslt ) in REFERENCE_TABLE_sub_select() argument 183 if ( rc == 0 && ref_ploidy != 0 ) in REFERENCE_TABLE_sub_select() 244 uint32_t ref_ploidy, VRowResult* rslt) in ALIGN_CMN_TABLE_sub_select() argument 301 assert( ref_ploidy > 0 && ref_ploidy <= rl_len ); in ALIGN_CMN_TABLE_sub_select() 310 if ( ( rl[ ref_ploidy - 1 ] - offset ) < left ) in ALIGN_CMN_TABLE_sub_select() 312 left = rl[ ref_ploidy - 1 ] - offset; in ALIGN_CMN_TABLE_sub_select() 469 const uint32_t* ref_ploidy = NULL; in reftbl_sub_select() local 473 ref_ploidy = ( const uint32_t* )argv[ 3 ].u.data.base; in reftbl_sub_select() 474 ref_ploidy += argv[3].u.data.first_elem; in reftbl_sub_select() [all …]
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/dports/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/ |
H A D | writer-evidence-dnbs.c | 73 uint32_t ref_ploidy; member 124 self->algn.ref_ploidy.buffer = &self->match.ref_ploidy; in CGWriterEvdDnbs_Make() 125 self->algn.ref_ploidy.elements = 1; in CGWriterEvdDnbs_Make() 188 self->match.ref_ploidy = ref->allele_indexes_to_read_number[ai]; in CGWriterEvdDnbs_Write() 189 if( self->match.ref_ploidy == 0 ) { in CGWriterEvdDnbs_Write() 233 self->match.ref_id, self->match.ref_start, self->match.ref_ploidy)); in CGWriterEvdDnbs_Write()
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/align/ |
H A D | writer-alignment.h | 118 TableWriterData ref_ploidy; member
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H A D | align.vschema | 186 * "ref_ploidy" [ DATA, OPTIONAL ] 190 INSDC:coord:len len * U32 ref_ploidy)
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/interfaces/align/ |
H A D | writer-alignment.h | 118 TableWriterData ref_ploidy; member
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H A D | align.vschema | 186 * "ref_ploidy" [ DATA, OPTIONAL ] 190 INSDC:coord:len len * U32 ref_ploidy)
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/dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/ |
H A D | sam-aligned.c | 1365 uint32_t ref_ploidy; in print_alignment_sam_ev() local 1367 … rc = read_uint32( align_id, atx->eval.cursor, atx->ref_ploidy_idx, &ref_ploidy, 0, "PLOIDY" ); in print_alignment_sam_ev() 1369 if ( rc == 0 && ( ref_ploidy == ( ploidy_idx + 1 ) ) ) in print_alignment_sam_ev()
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/ |
H A D | writer-alignment.c | 272 TW_COL_WRITE(cself->base, cself->cols[ewalgn_cn_REF_PLOIDY], data->ref_ploidy); in TableWriterAlgn_Write()
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/ |
H A D | writer-alignment.c | 272 TW_COL_WRITE(cself->base, cself->cols[ewalgn_cn_REF_PLOIDY], data->ref_ploidy); in TableWriterAlgn_Write()
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