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Searched refs:ref_ploidy (Results 1 – 10 of 10) sorted by relevance

/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/
H A Dref-tbl-sub-select.c60 uint32_t ref_ploidy, VRowResult* rslt);
102 uint32_t ref_ploidy, VRowResult* rslt ) in REFERENCE_TABLE_sub_select() argument
183 if ( rc == 0 && ref_ploidy != 0 ) in REFERENCE_TABLE_sub_select()
244 uint32_t ref_ploidy, VRowResult* rslt) in ALIGN_CMN_TABLE_sub_select() argument
301 assert( ref_ploidy > 0 && ref_ploidy <= rl_len ); in ALIGN_CMN_TABLE_sub_select()
310 if ( ( rl[ ref_ploidy - 1 ] - offset ) < left ) in ALIGN_CMN_TABLE_sub_select()
312 left = rl[ ref_ploidy - 1 ] - offset; in ALIGN_CMN_TABLE_sub_select()
469 const uint32_t* ref_ploidy = NULL; in reftbl_sub_select() local
473 ref_ploidy = ( const uint32_t* )argv[ 3 ].u.data.base; in reftbl_sub_select()
474 ref_ploidy += argv[3].u.data.first_elem; in reftbl_sub_select()
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/axf/
H A Dref-tbl-sub-select.c60 uint32_t ref_ploidy, VRowResult* rslt);
102 uint32_t ref_ploidy, VRowResult* rslt ) in REFERENCE_TABLE_sub_select() argument
183 if ( rc == 0 && ref_ploidy != 0 ) in REFERENCE_TABLE_sub_select()
244 uint32_t ref_ploidy, VRowResult* rslt) in ALIGN_CMN_TABLE_sub_select() argument
301 assert( ref_ploidy > 0 && ref_ploidy <= rl_len ); in ALIGN_CMN_TABLE_sub_select()
310 if ( ( rl[ ref_ploidy - 1 ] - offset ) < left ) in ALIGN_CMN_TABLE_sub_select()
312 left = rl[ ref_ploidy - 1 ] - offset; in ALIGN_CMN_TABLE_sub_select()
469 const uint32_t* ref_ploidy = NULL; in reftbl_sub_select() local
473 ref_ploidy = ( const uint32_t* )argv[ 3 ].u.data.base; in reftbl_sub_select()
474 ref_ploidy += argv[3].u.data.first_elem; in reftbl_sub_select()
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/dports/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/
H A Dwriter-evidence-dnbs.c73 uint32_t ref_ploidy; member
124 self->algn.ref_ploidy.buffer = &self->match.ref_ploidy; in CGWriterEvdDnbs_Make()
125 self->algn.ref_ploidy.elements = 1; in CGWriterEvdDnbs_Make()
188 self->match.ref_ploidy = ref->allele_indexes_to_read_number[ai]; in CGWriterEvdDnbs_Write()
189 if( self->match.ref_ploidy == 0 ) { in CGWriterEvdDnbs_Write()
233 self->match.ref_id, self->match.ref_start, self->match.ref_ploidy)); in CGWriterEvdDnbs_Write()
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/align/
H A Dwriter-alignment.h118 TableWriterData ref_ploidy; member
H A Dalign.vschema186 * "ref_ploidy" [ DATA, OPTIONAL ]
190 INSDC:coord:len len * U32 ref_ploidy)
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/interfaces/align/
H A Dwriter-alignment.h118 TableWriterData ref_ploidy; member
H A Dalign.vschema186 * "ref_ploidy" [ DATA, OPTIONAL ]
190 INSDC:coord:len len * U32 ref_ploidy)
/dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/
H A Dsam-aligned.c1365 uint32_t ref_ploidy; in print_alignment_sam_ev() local
1367 … rc = read_uint32( align_id, atx->eval.cursor, atx->ref_ploidy_idx, &ref_ploidy, 0, "PLOIDY" ); in print_alignment_sam_ev()
1369 if ( rc == 0 && ( ref_ploidy == ( ploidy_idx + 1 ) ) ) in print_alignment_sam_ev()
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/
H A Dwriter-alignment.c272 TW_COL_WRITE(cself->base, cself->cols[ewalgn_cn_REF_PLOIDY], data->ref_ploidy); in TableWriterAlgn_Write()
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/
H A Dwriter-alignment.c272 TW_COL_WRITE(cself->base, cself->cols[ewalgn_cn_REF_PLOIDY], data->ref_ploidy); in TableWriterAlgn_Write()