Searched refs:reflist_options (Results 1 – 6 of 6) sorted by relevance
/dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/ |
H A D | inputfiles.c | 61 const char * path, uint32_t reflist_options, bool show_err ) in append_database() argument 64 rc_t rc = ReferenceList_MakeDatabase( &reflist, db, reflist_options, 0, NULL, 0 ); in append_database() 199 const char * path, uint32_t reflist_options, bool show_err ) in open_database() argument 218 rc = append_database( self, db, path, reflist_options, show_err ); in open_database() 272 const VNamelist * src, uint32_t reflist_options ) in split_input_files() argument 294 … case kptDatabase : rc = open_database( self, mgr, path, reflist_options, true ); break; in split_input_files() 310 const VNamelist * src, uint32_t reflist_options ) in discover_input_files() argument 330 rc = split_input_files( ipf, mgr, src, reflist_options ); in discover_input_files()
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H A D | cmdline_cmn.c | 650 uint32_t reflist_options = ereferencelist_4na; in prepare_reflist() local 653 reflist_options |= ereferencelist_usePrimaryIds; in prepare_reflist() 656 reflist_options |= ereferencelist_useSecondaryIds; in prepare_reflist() 659 reflist_options |= ereferencelist_useEvidenceIds; in prepare_reflist() 661 rc = ReferenceList_MakeDatabase( &ctx->reflist, ctx->db, reflist_options, 0, NULL, 0 ); in prepare_reflist()
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H A D | inputfiles.h | 95 const VNamelist * src, uint32_t reflist_options );
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H A D | ref_walker.c | 793 uint32_t reflist_options = ref_walker_make_reflist_options( self ); /* above */ in ref_walker_walk_ref_range() local 809 rc = ReferenceList_MakeDatabase( &ref_list, db, reflist_options, 0, NULL, 0 ); in ref_walker_walk_ref_range()
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/test/align/ |
H A D | pileup_estimator.cpp | 81 uint32_t reflist_options = ereferencelist_usePrimaryIds; in calc_coverage_sum_using_ref_iter() local 82 …rc = ReferenceList_MakeDatabase( &ref_list, db, reflist_options, 0, NULL, 0 ); /* align/reference.… in calc_coverage_sum_using_ref_iter() 168 uint32_t reflist_options = ereferencelist_usePrimaryIds; in calc_coverage_using_ref_iter() local 169 …rc = ReferenceList_MakeDatabase( &ref_list, db, reflist_options, 0, NULL, 0 ); /* align/reference.… in calc_coverage_using_ref_iter()
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/test/align/ |
H A D | pileup_estimator.cpp | 81 uint32_t reflist_options = ereferencelist_usePrimaryIds; in calc_coverage_sum_using_ref_iter() local 82 …rc = ReferenceList_MakeDatabase( &ref_list, db, reflist_options, 0, NULL, 0 ); /* align/reference.… in calc_coverage_sum_using_ref_iter() 168 uint32_t reflist_options = ereferencelist_usePrimaryIds; in calc_coverage_using_ref_iter() local 169 …rc = ReferenceList_MakeDatabase( &ref_list, db, reflist_options, 0, NULL, 0 ); /* align/reference.… in calc_coverage_using_ref_iter()
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