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Searched refs:rel_start (Results 1 – 25 of 33) sorted by relevance

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/dports/science/mpqc/mpqc-2.3.1/src/lib/util/psi3/libpsio/
H A Dwrite.cc29 psio_address rel_start, psio_address *rel_end) in psio_write() argument
41 if(rel_start.page||rel_start.offset) psio_error(unit,PSIO_ERROR_BLKSTART); in psio_write()
74 *rel_end = psio_get_address(rel_start,size); in psio_write()
79 address = psio_get_global_address(this_entry->sadd, rel_start); in psio_write()
113 *rel_end = psio_get_address(rel_start, size); in psio_write()
/dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/lib/tRNAscanSE/
H A DtRNA.pm485 my ($rel_start, $rel_end) = @_;
487 $ac->{rel_start} = $rel_start;
519 my ($rel_start, $rel_end, $type, $seq) = @_;
528 $end = $self->{data}->[_end] - $rel_start + 1;
539 $intron->{rel_start} = $rel_start;
553 $self->{data}->[_ar_introns]->[$index]->{rel_start} = $rel_start;
599 …@{$self->{data}->[_ar_introns]} = sort {$a->{rel_start} <=> $b->{rel_start}} @{$self->{data}->[_ar…
613 …$self->{data}->[_ar_introns]->[$ct]->{rel_start} = $self->{data}->[_ar_introns]->[$ct - 1]->{rel_s…
655 …eq = uc(substr($self->{data}->[_seq], $intron->{rel_start} - 1, ($intron->{rel_end} - $intron->{re…
1371 my ($rel_start, $rel_end) = @_;
[all …]
H A DScanResult.pm50 if ($ar_introns[0]->{rel_start} < $ar_introns[0]->{rel_end})
466 print {$$SECSTRUCT} $ar_ac_pos[$i]->{rel_start} + $tRNA->start() - 1, "-",
467 $ar_ac_pos[$i]->{rel_start} + $tRNA->start() + 1;
471 print {$$SECSTRUCT} $tRNA->end() - $ar_ac_pos[$i]->{rel_start} + 1, "-",
472 $tRNA->end() - $ar_ac_pos[$i]->{rel_start} - 1;
583 …$intron_seq = uc(substr($tRNA->seq(), $intron->{rel_start} - 1, $intron->{rel_end} - $intron->{rel…
950 print {$$ACEOUT} "Source_Exons\t1 ", $ar_introns[0]->{rel_start} - 1,"\n";
1050 $block_sizes .= ($ar_introns[$i]->{rel_start} - $prev_start).",";
1062 $block_starts .= ($prev_start - $ar_introns[$i]->{rel_start} + 1).",";
1063 $prev_start = $ar_introns[$i]->{rel_start};
[all …]
H A DIntResultFile.pm172 print $fh $ar_ac_pos[$i]->{rel_start}."-".$ar_ac_pos[$i]->{rel_end}.";";
178 …print $fh $ar_introns[$i]->{rel_start}."-".$ar_introns[$i]->{rel_end}.",".$ar_introns[$i]->{start}…
247 my ($rel_start, $rel_end, $start, $end) = (0, 0, 0, 0);
250 $rel_start = $1;
258 $tRNA->add_intron($rel_start, $rel_end, $start, $end, $parts[2], $parts[3]);
H A DResultFileReader.pm200 my ($rel_start, $rel_end) = (0,0);
203 $rel_start = $intron_starts[$j] - $startpos + 1;
208 $rel_start = $startpos - $intron_starts[$j] + 1;
211 $tRNA->add_intron($rel_start, $rel_end, $intron_starts[$j], $intron_ends[$j], "", "");
H A DCM.pm995 if ($acodon_index > $introns[$i]->{rel_start})
997 $acodon_index += ($introns[$i]->{rel_end} - $introns[$i]->{rel_start} + 1);
999 …elsif ($acodon_index < $introns[$i]->{rel_start} and ($acodon_index + 2) >= $introns[$i]->{rel_sta…
1001 $acodon_end1 = $introns[$i]->{rel_start} - 1;
1004 elsif ($acodon_index + 2 < $introns[$i]->{rel_start})
1056 if ($istart > $introns[$i]->{rel_start})
1061 elsif ($iend < $introns[$i]->{rel_start})
1264 $ar_ac_pos[0]->{rel_start} += 1;
1298 $ar_ac_pos[0]->{rel_start} -= 1;
1350 $ar_ac_pos[$i]->{rel_start} -= 1;
[all …]
/dports/games/dungeoncrawl/dc400b26-src/source/
H A Dmessage.cc430 int rel_start; in replay_messages() local
434 rel_start = 0; in replay_messages()
436 rel_start = win_start_line + 1; in replay_messages()
439 rel_start = win_start_line - first_message + 1; in replay_messages()
441 rel_start = (win_start_line + NUM_STORED_MESSAGES) - first_message + 1; in replay_messages()
443 int rel_end = rel_start + (num_lines - 2) - 1; in replay_messages()
449 cprintf( "<< Lines %d-%d of %d >>", rel_start, rel_end, num_msgs ); in replay_messages()
/dports/sysutils/disktype/disktype-9/
H A Dbuffer.c232 u8 pos, rel_start, rel_end; in ensure_chunk() local
274 for (rel_start = 0; rel_start < CHUNKSIZE; rel_start = rel_end) { in ensure_chunk()
275 rel_end = rel_start + s->blocksize; in ensure_chunk()
278 pos = c->start + rel_start; in ensure_chunk()
283 if (s->read_block(s, pos, c->buf + rel_start)) { in ensure_chunk()
289 c->len = rel_start; /* this is safe as it can only mean a shrink */ in ensure_chunk()
/dports/biology/py-bx-python/bx-python-0.8.13/scripts/
H A Dmaf_interval_alignibility.py66 rel_start = max(start, ref.start) - start
79 missing_bits[i][rel_start:rel_end] = True
83 aligned_bits[i][rel_start:rel_end] = True
/dports/german/BBBike/BBBike-3.18/
H A DAmpelschaltung.pm665 my @rel_start;
674 @rel_start = ();
676 @rel_start = ($5, $6, $7);
686 -relstart => \@rel_start,
716 my $rel_start = $args{-relstart};
760 my $gs = AmpelschaltungCommon::time2s($green_time, -relstart => $rel_start);
761 my $rs = AmpelschaltungCommon::time2s($red_time, -relstart => $rel_start);
774 if ($red_time =~ /^\+(\d+)/ and $green_time eq '' and $last_e and !@$rel_start) {
785 if (@$rel_start) {
790 my $s = AmpelschaltungCommon::time2s($t, -relstart => $rel_start);
/dports/audio/zplugins-lv2/ZPlugins-0.2.4/ext/Soundpipe/modules/
H A Dtenv.c25 env->rel_start = env->sr * (env->atk + env->hold); in sp_tenv_reinit()
39 }else if (pos < env->rel_start){ in sp_tenv_comp()
73 p->rel_start = p->sr * (p->atk + p->hold); in sp_tenv_init()
/dports/comms/gnuradio/gnuradio-3.8.4.0/gnuradio-runtime/include/gnuradio/
H A Dblock_gateway.h257 uint64_t rel_start, in block__get_tags_in_window() argument
261 gr::block::get_tags_in_window(tags, which_input, rel_start, rel_end); in block__get_tags_in_window()
266 uint64_t rel_start, in block__get_tags_in_window() argument
271 gr::block::get_tags_in_window(tags, which_input, rel_start, rel_end, key); in block__get_tags_in_window()
H A Dblock.h901 uint64_t rel_start,
918 uint64_t rel_start,
/dports/biology/sra-tools/sra-tools-2.11.0/tools/ref-idx/
H A Dcoverage_iter.c460 int32_t rel_start = ( ref_pos - ( uint32_t )slice->start ); in detailed_coverage_make() local
463 if ( rel_start < 0 ) in detailed_coverage_make()
465 ref_len += rel_start; in detailed_coverage_make()
466 rel_start = 0; in detailed_coverage_make()
468 for ( i = rel_start; i < ref_len && i < slice->count; ++i ) in detailed_coverage_make()
/dports/deskutils/baobab/baobab-41.0/src/
H A Dbaobab-chart.vala41 public double rel_start;
250 …unowned List<ChartItem> add_item (uint depth, double rel_start, double rel_size, Gtk.TreeIter iter…
263 item.rel_start = rel_start;
285 double rel_start;
312 rel_start = 0;
315 child_node = add_item (item.depth + 1, rel_start, percent, child_iter);
318 rel_start += percent;
H A Dbaobab-treemap.vala136 treemapitem.cr_rect.x = p_area.x + (item.rel_start * width / 100) + ITEM_PADDING;
144 treemapitem.cr_rect.y = p_area.y + (item.rel_start * height / 100) + ITEM_PADDING;
/dports/audio/zplugins-lv2/ZPlugins-0.2.4/ext/Soundpipe/h/
H A Dtenv.h3 uint32_t pos, atk_end, rel_start, sr, totaldur; member
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/
H A Dunsupported_pileup_estimator.c491 int32_t rel_start = ( ref_pos - ( uint32_t )slice_start ); in PerformEstimation() local
494 if ( rel_start < 0 ) in PerformEstimation()
496 ref_len += rel_start; in PerformEstimation()
497 rel_start = 0; in PerformEstimation()
499 for ( i = rel_start, j = 0; j < ref_len && i < slice_len; ++i, ++j ) in PerformEstimation()
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/
H A Dunsupported_pileup_estimator.c491 int32_t rel_start = ( ref_pos - ( uint32_t )slice_start ); in PerformEstimation() local
494 if ( rel_start < 0 ) in PerformEstimation()
496 ref_len += rel_start; in PerformEstimation()
497 rel_start = 0; in PerformEstimation()
499 for ( i = rel_start, j = 0; j < ref_len && i < slice_len; ++i, ++j ) in PerformEstimation()
/dports/sysutils/cfengine-devel/core-d08ae9eff/contrib/cf-profile/
H A Dcf-profile.pl99 my $rel_start = sprintf("%.5f", $data{bundles}{$b}{start} - $data{start});
109 print "|$tab"."$tab"."Relative start: $rel_start s\n" if defined($opts{v});
/dports/deskutils/mate-utils/mate-utils-1.26.0/baobab/src/
H A Dbaobab-chart.c425 gdouble rel_start, in baobab_chart_add_item() argument
446 item->rel_start = rel_start; in baobab_chart_add_item()
512 gdouble rel_start; in baobab_chart_get_items() local
560 rel_start = 0; in baobab_chart_get_items()
569 rel_start, in baobab_chart_get_items()
574 rel_start += size; in baobab_chart_get_items()
H A Dbaobab-treemap.c227 rect->x = p_area.x + (item->rel_start * width / 100) + ITEM_PADDING; in baobab_treemap_calculate_item_geometry()
237 rect->y = p_area.y + (item->rel_start * height / 100) + ITEM_PADDING; in baobab_treemap_calculate_item_geometry()
H A Dbaobab-chart.h72 gdouble rel_start; member
/dports/sysutils/flashrom/flashrom-v1.2/
H A Dflashrom.c940 unsigned int rel_start = 0, first_len = 0; in get_next_write() local
985 rel_start = i * stride; in get_next_write()
997 first_len = min(i * stride - rel_start, len); in get_next_write()
998 *first_start += rel_start; in get_next_write()
1653 const chipoff_t rel_start = start - info->erase_start; /* within this erase block */ in erase_block() local
1655 if (flashctx->chip->read(flashctx, backup_contents + rel_start, start, len)) { in erase_block()
1752 const chipoff_t rel_start = start - info->erase_start; /* within this erase block */ in read_erase_write_block() local
1754 if (flashctx->chip->read(flashctx, newc + rel_start, start, len)) { in read_erase_write_block()
1758 memcpy(info->curcontents + start, newc + rel_start, len); in read_erase_write_block()
/dports/textproc/py-nltk/nltk-3.4.1/nltk/sem/
H A Dglue.py232 rel_start = parts[2].index('[') + 1
234 if rel_start == rel_end:
238 r.strip() for r in parts[2][rel_start:rel_end].split(',')

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