/dports/science/mpqc/mpqc-2.3.1/src/lib/util/psi3/libpsio/ |
H A D | write.cc | 29 psio_address rel_start, psio_address *rel_end) in psio_write() argument 41 if(rel_start.page||rel_start.offset) psio_error(unit,PSIO_ERROR_BLKSTART); in psio_write() 74 *rel_end = psio_get_address(rel_start,size); in psio_write() 79 address = psio_get_global_address(this_entry->sadd, rel_start); in psio_write() 113 *rel_end = psio_get_address(rel_start, size); in psio_write()
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/dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/lib/tRNAscanSE/ |
H A D | tRNA.pm | 485 my ($rel_start, $rel_end) = @_; 487 $ac->{rel_start} = $rel_start; 519 my ($rel_start, $rel_end, $type, $seq) = @_; 528 $end = $self->{data}->[_end] - $rel_start + 1; 539 $intron->{rel_start} = $rel_start; 553 $self->{data}->[_ar_introns]->[$index]->{rel_start} = $rel_start; 599 …@{$self->{data}->[_ar_introns]} = sort {$a->{rel_start} <=> $b->{rel_start}} @{$self->{data}->[_ar… 613 …$self->{data}->[_ar_introns]->[$ct]->{rel_start} = $self->{data}->[_ar_introns]->[$ct - 1]->{rel_s… 655 …eq = uc(substr($self->{data}->[_seq], $intron->{rel_start} - 1, ($intron->{rel_end} - $intron->{re… 1371 my ($rel_start, $rel_end) = @_; [all …]
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H A D | ScanResult.pm | 50 if ($ar_introns[0]->{rel_start} < $ar_introns[0]->{rel_end}) 466 print {$$SECSTRUCT} $ar_ac_pos[$i]->{rel_start} + $tRNA->start() - 1, "-", 467 $ar_ac_pos[$i]->{rel_start} + $tRNA->start() + 1; 471 print {$$SECSTRUCT} $tRNA->end() - $ar_ac_pos[$i]->{rel_start} + 1, "-", 472 $tRNA->end() - $ar_ac_pos[$i]->{rel_start} - 1; 583 …$intron_seq = uc(substr($tRNA->seq(), $intron->{rel_start} - 1, $intron->{rel_end} - $intron->{rel… 950 print {$$ACEOUT} "Source_Exons\t1 ", $ar_introns[0]->{rel_start} - 1,"\n"; 1050 $block_sizes .= ($ar_introns[$i]->{rel_start} - $prev_start).","; 1062 $block_starts .= ($prev_start - $ar_introns[$i]->{rel_start} + 1).","; 1063 $prev_start = $ar_introns[$i]->{rel_start}; [all …]
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H A D | IntResultFile.pm | 172 print $fh $ar_ac_pos[$i]->{rel_start}."-".$ar_ac_pos[$i]->{rel_end}.";"; 178 …print $fh $ar_introns[$i]->{rel_start}."-".$ar_introns[$i]->{rel_end}.",".$ar_introns[$i]->{start}… 247 my ($rel_start, $rel_end, $start, $end) = (0, 0, 0, 0); 250 $rel_start = $1; 258 $tRNA->add_intron($rel_start, $rel_end, $start, $end, $parts[2], $parts[3]);
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H A D | ResultFileReader.pm | 200 my ($rel_start, $rel_end) = (0,0); 203 $rel_start = $intron_starts[$j] - $startpos + 1; 208 $rel_start = $startpos - $intron_starts[$j] + 1; 211 $tRNA->add_intron($rel_start, $rel_end, $intron_starts[$j], $intron_ends[$j], "", "");
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H A D | CM.pm | 995 if ($acodon_index > $introns[$i]->{rel_start}) 997 $acodon_index += ($introns[$i]->{rel_end} - $introns[$i]->{rel_start} + 1); 999 …elsif ($acodon_index < $introns[$i]->{rel_start} and ($acodon_index + 2) >= $introns[$i]->{rel_sta… 1001 $acodon_end1 = $introns[$i]->{rel_start} - 1; 1004 elsif ($acodon_index + 2 < $introns[$i]->{rel_start}) 1056 if ($istart > $introns[$i]->{rel_start}) 1061 elsif ($iend < $introns[$i]->{rel_start}) 1264 $ar_ac_pos[0]->{rel_start} += 1; 1298 $ar_ac_pos[0]->{rel_start} -= 1; 1350 $ar_ac_pos[$i]->{rel_start} -= 1; [all …]
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/dports/games/dungeoncrawl/dc400b26-src/source/ |
H A D | message.cc | 430 int rel_start; in replay_messages() local 434 rel_start = 0; in replay_messages() 436 rel_start = win_start_line + 1; in replay_messages() 439 rel_start = win_start_line - first_message + 1; in replay_messages() 441 rel_start = (win_start_line + NUM_STORED_MESSAGES) - first_message + 1; in replay_messages() 443 int rel_end = rel_start + (num_lines - 2) - 1; in replay_messages() 449 cprintf( "<< Lines %d-%d of %d >>", rel_start, rel_end, num_msgs ); in replay_messages()
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/dports/sysutils/disktype/disktype-9/ |
H A D | buffer.c | 232 u8 pos, rel_start, rel_end; in ensure_chunk() local 274 for (rel_start = 0; rel_start < CHUNKSIZE; rel_start = rel_end) { in ensure_chunk() 275 rel_end = rel_start + s->blocksize; in ensure_chunk() 278 pos = c->start + rel_start; in ensure_chunk() 283 if (s->read_block(s, pos, c->buf + rel_start)) { in ensure_chunk() 289 c->len = rel_start; /* this is safe as it can only mean a shrink */ in ensure_chunk()
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/dports/biology/py-bx-python/bx-python-0.8.13/scripts/ |
H A D | maf_interval_alignibility.py | 66 rel_start = max(start, ref.start) - start 79 missing_bits[i][rel_start:rel_end] = True 83 aligned_bits[i][rel_start:rel_end] = True
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/dports/german/BBBike/BBBike-3.18/ |
H A D | Ampelschaltung.pm | 665 my @rel_start; 674 @rel_start = (); 676 @rel_start = ($5, $6, $7); 686 -relstart => \@rel_start, 716 my $rel_start = $args{-relstart}; 760 my $gs = AmpelschaltungCommon::time2s($green_time, -relstart => $rel_start); 761 my $rs = AmpelschaltungCommon::time2s($red_time, -relstart => $rel_start); 774 if ($red_time =~ /^\+(\d+)/ and $green_time eq '' and $last_e and !@$rel_start) { 785 if (@$rel_start) { 790 my $s = AmpelschaltungCommon::time2s($t, -relstart => $rel_start);
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/dports/audio/zplugins-lv2/ZPlugins-0.2.4/ext/Soundpipe/modules/ |
H A D | tenv.c | 25 env->rel_start = env->sr * (env->atk + env->hold); in sp_tenv_reinit() 39 }else if (pos < env->rel_start){ in sp_tenv_comp() 73 p->rel_start = p->sr * (p->atk + p->hold); in sp_tenv_init()
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/dports/comms/gnuradio/gnuradio-3.8.4.0/gnuradio-runtime/include/gnuradio/ |
H A D | block_gateway.h | 257 uint64_t rel_start, in block__get_tags_in_window() argument 261 gr::block::get_tags_in_window(tags, which_input, rel_start, rel_end); in block__get_tags_in_window() 266 uint64_t rel_start, in block__get_tags_in_window() argument 271 gr::block::get_tags_in_window(tags, which_input, rel_start, rel_end, key); in block__get_tags_in_window()
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H A D | block.h | 901 uint64_t rel_start, 918 uint64_t rel_start,
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/dports/biology/sra-tools/sra-tools-2.11.0/tools/ref-idx/ |
H A D | coverage_iter.c | 460 int32_t rel_start = ( ref_pos - ( uint32_t )slice->start ); in detailed_coverage_make() local 463 if ( rel_start < 0 ) in detailed_coverage_make() 465 ref_len += rel_start; in detailed_coverage_make() 466 rel_start = 0; in detailed_coverage_make() 468 for ( i = rel_start; i < ref_len && i < slice->count; ++i ) in detailed_coverage_make()
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/dports/deskutils/baobab/baobab-41.0/src/ |
H A D | baobab-chart.vala | 41 public double rel_start; 250 …unowned List<ChartItem> add_item (uint depth, double rel_start, double rel_size, Gtk.TreeIter iter… 263 item.rel_start = rel_start; 285 double rel_start; 312 rel_start = 0; 315 child_node = add_item (item.depth + 1, rel_start, percent, child_iter); 318 rel_start += percent;
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H A D | baobab-treemap.vala | 136 treemapitem.cr_rect.x = p_area.x + (item.rel_start * width / 100) + ITEM_PADDING; 144 treemapitem.cr_rect.y = p_area.y + (item.rel_start * height / 100) + ITEM_PADDING;
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/dports/audio/zplugins-lv2/ZPlugins-0.2.4/ext/Soundpipe/h/ |
H A D | tenv.h | 3 uint32_t pos, atk_end, rel_start, sr, totaldur; member
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/ |
H A D | unsupported_pileup_estimator.c | 491 int32_t rel_start = ( ref_pos - ( uint32_t )slice_start ); in PerformEstimation() local 494 if ( rel_start < 0 ) in PerformEstimation() 496 ref_len += rel_start; in PerformEstimation() 497 rel_start = 0; in PerformEstimation() 499 for ( i = rel_start, j = 0; j < ref_len && i < slice_len; ++i, ++j ) in PerformEstimation()
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/ |
H A D | unsupported_pileup_estimator.c | 491 int32_t rel_start = ( ref_pos - ( uint32_t )slice_start ); in PerformEstimation() local 494 if ( rel_start < 0 ) in PerformEstimation() 496 ref_len += rel_start; in PerformEstimation() 497 rel_start = 0; in PerformEstimation() 499 for ( i = rel_start, j = 0; j < ref_len && i < slice_len; ++i, ++j ) in PerformEstimation()
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/dports/sysutils/cfengine-devel/core-d08ae9eff/contrib/cf-profile/ |
H A D | cf-profile.pl | 99 my $rel_start = sprintf("%.5f", $data{bundles}{$b}{start} - $data{start}); 109 print "|$tab"."$tab"."Relative start: $rel_start s\n" if defined($opts{v});
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/dports/deskutils/mate-utils/mate-utils-1.26.0/baobab/src/ |
H A D | baobab-chart.c | 425 gdouble rel_start, in baobab_chart_add_item() argument 446 item->rel_start = rel_start; in baobab_chart_add_item() 512 gdouble rel_start; in baobab_chart_get_items() local 560 rel_start = 0; in baobab_chart_get_items() 569 rel_start, in baobab_chart_get_items() 574 rel_start += size; in baobab_chart_get_items()
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H A D | baobab-treemap.c | 227 rect->x = p_area.x + (item->rel_start * width / 100) + ITEM_PADDING; in baobab_treemap_calculate_item_geometry() 237 rect->y = p_area.y + (item->rel_start * height / 100) + ITEM_PADDING; in baobab_treemap_calculate_item_geometry()
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H A D | baobab-chart.h | 72 gdouble rel_start; member
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/dports/sysutils/flashrom/flashrom-v1.2/ |
H A D | flashrom.c | 940 unsigned int rel_start = 0, first_len = 0; in get_next_write() local 985 rel_start = i * stride; in get_next_write() 997 first_len = min(i * stride - rel_start, len); in get_next_write() 998 *first_start += rel_start; in get_next_write() 1653 const chipoff_t rel_start = start - info->erase_start; /* within this erase block */ in erase_block() local 1655 if (flashctx->chip->read(flashctx, backup_contents + rel_start, start, len)) { in erase_block() 1752 const chipoff_t rel_start = start - info->erase_start; /* within this erase block */ in read_erase_write_block() local 1754 if (flashctx->chip->read(flashctx, newc + rel_start, start, len)) { in read_erase_write_block() 1758 memcpy(info->curcontents + start, newc + rel_start, len); in read_erase_write_block()
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/dports/textproc/py-nltk/nltk-3.4.1/nltk/sem/ |
H A D | glue.py | 232 rel_start = parts[2].index('[') + 1 234 if rel_start == rel_end: 238 r.strip() for r in parts[2][rel_start:rel_end].split(',')
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