| /dports/biology/gcta/gcta_1.26.0_src/ |
| H A D | option.cpp | 101 vector<double> reml_priors, reml_priors_var, fixed_rg_val; in option() local
574 reml_priors.push_back(atof(argv[i])); in option()
579 for (j = 0; j < reml_priors.size(); j++) { in option()
580 cout << reml_priors[j] << " "; in option()
581 if (reml_priors[j] > 1.0 || reml_priors[j] < -10.0) err_flag = true; in option()
584 …if (err_flag || reml_priors.empty()) throw ("\nError: --reml-priors. Prior values of variance expl… in option()
1064 …subtract_grm_file, phen_file, qcovar_file, covar_file, mphen, MaxIter, reml_priors, reml_priors_va… in option()
1065 …er_gcta->mlma_loco(phen_file, qcovar_file, covar_file, mphen, MaxIter, reml_priors, reml_priors_va… in option()
1113 …subtract_grm_file, phen_file, qcovar_file, covar_file, mphen, MaxIter, reml_priors, reml_priors_va… in option()
1114 …er_gcta->mlma_loco(phen_file, qcovar_file, covar_file, mphen, MaxIter, reml_priors, reml_priors_va… in option()
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| H A D | est_hsq.cpp | 644 init_varcomp(reml_priors_var, reml_priors, varcmp); in reml()
822 else if (!reml_priors.empty()) { in init_varcomp()
825 varcmp[pos] = reml_priors[pos] * _y_Ssq; in init_varcomp()
826 d_buf += reml_priors[pos]; in init_varcomp()
832 varcmp[pos] = reml_priors[pos] * _y_Ssq; in init_varcomp()
833 d_buf += reml_priors[pos]; in init_varcomp()
853 else if (!reml_priors.empty()) { in init_varcomp()
855 varcmp[i] = reml_priors[i] * _y_Ssq; in init_varcomp()
856 d_buf += reml_priors[i]; in init_varcomp()
877 vector<double> reml_priors_var, reml_priors; in lgL_reduce_mdl() local
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| H A D | gcta.h | 109 …_rand_eff, bool est_fix_eff, int reml_mtd, int MaxIter, vector<double> reml_priors, vector<double>…
120 …_rand_eff, bool est_fix_eff, int reml_mtd, int MaxIter, vector<double> reml_priors, vector<double>…
157 …qcovar_file, string covar_file, int mphen, int MaxIter, vector<double> reml_priors, vector<double>…
158 …qcovar_file, string covar_file, int mphen, int MaxIter, vector<double> reml_priors, vector<double>…
243 …void reml(bool pred_rand_eff, bool est_fix_eff, vector<double> &reml_priors, vector<double> &reml_…
245 …void init_varcomp(vector<double> &reml_priors_var, vector<double> &reml_priors, eigenVector &varcm…
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| H A D | mlm_assoc.cpp | 15 …qcovar_file, string covar_file, int mphen, int MaxIter, vector<double> reml_priors, vector<double>… in mlma() argument
192 reml(false, true, reml_priors, reml_priors_var, -2.0, -2.0, no_constrain, true, true); in mlma()
346 …qcovar_file, string covar_file, int mphen, int MaxIter, vector<double> reml_priors, vector<double>… in mlma_loco() argument
472 reml(false, true, reml_priors, reml_priors_var, -2.0, -2.0, no_constrain, true, true); in mlma_loco()
475 reml_priors.clear(); in mlma_loco()
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| H A D | bivar_reml.cpp | 15 …_rand_eff, bool est_fix_eff, int reml_mtd, int MaxIter, vector<double> reml_priors, vector<double>… in fit_bivar_reml() argument
288 …reml(pred_rand_eff, est_fix_eff, reml_priors, reml_priors_var, prevalence, prevalence2, no_constra… in fit_bivar_reml()
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