| /dports/biology/gcta/gcta_1.26.0_src/ |
| H A D | option.cpp | 101 vector<double> reml_priors, reml_priors_var, fixed_rg_val; in option() local
591 reml_priors_var.push_back(atof(argv[i])); in option()
596 for (j = 0; j < reml_priors_var.size(); j++) { in option()
597 cout << reml_priors_var[j] << " "; in option()
598 if (reml_priors_var[j] < 0.0) err_flag = true; in option()
601 …if (reml_priors_var.empty()) throw ("\nError: " + s_buf + ". Prior values of variance components a… in option()
1064 …le, phen_file, qcovar_file, covar_file, mphen, MaxIter, reml_priors, reml_priors_var, no_constrain… in option()
1065 …oco(phen_file, qcovar_file, covar_file, mphen, MaxIter, reml_priors, reml_priors_var, no_constrain… in option()
1113 …le, phen_file, qcovar_file, covar_file, mphen, MaxIter, reml_priors, reml_priors_var, no_constrain… in option()
1114 …oco(phen_file, qcovar_file, covar_file, mphen, MaxIter, reml_priors, reml_priors_var, no_constrain… in option()
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| H A D | est_hsq.cpp | 629 bool reml_priors_flag = !reml_priors.empty(), reml_priors_var_flag = !reml_priors_var.empty(); in reml()
634 if (reml_priors_var_flag && reml_priors_var.size() < _r_indx.size() - 1) { in reml()
644 init_varcomp(reml_priors_var, reml_priors, varcmp); in reml()
819 if (!reml_priors_var.empty()) { in init_varcomp()
820 for (i = 0; i < _r_indx.size(); i++) varcmp[i] = reml_priors_var[i]; in init_varcomp()
848 if (!reml_priors_var.empty()) { in init_varcomp()
849 for (i = 0; i < _r_indx.size() - 1; i++) varcmp[i] = reml_priors_var[i]; in init_varcomp()
850 … if (reml_priors_var.size() < _r_indx.size()) varcmp[_r_indx.size() - 1] = _y_Ssq - varcmp.sum(); in init_varcomp()
851 else varcmp[_r_indx.size() - 1] = reml_priors_var[_r_indx.size() - 1]; in init_varcomp()
877 vector<double> reml_priors_var, reml_priors; in lgL_reduce_mdl() local
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| H A D | gcta.h | 109 …nt reml_mtd, int MaxIter, vector<double> reml_priors, vector<double> reml_priors_var, vector<int> …
120 …nt reml_mtd, int MaxIter, vector<double> reml_priors, vector<double> reml_priors_var, vector<int> …
157 …, int mphen, int MaxIter, vector<double> reml_priors, vector<double> reml_priors_var, bool no_cons…
158 …, int mphen, int MaxIter, vector<double> reml_priors, vector<double> reml_priors_var, bool no_cons…
243 …_eff, bool est_fix_eff, vector<double> &reml_priors, vector<double> &reml_priors_var, double preva…
245 …void init_varcomp(vector<double> &reml_priors_var, vector<double> &reml_priors, eigenVector &varcm…
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| H A D | mlm_assoc.cpp | 15 …, int mphen, int MaxIter, vector<double> reml_priors, vector<double> reml_priors_var, bool no_cons… in mlma() argument
192 reml(false, true, reml_priors, reml_priors_var, -2.0, -2.0, no_constrain, true, true); in mlma()
346 …, int mphen, int MaxIter, vector<double> reml_priors, vector<double> reml_priors_var, bool no_cons… in mlma_loco() argument
472 reml(false, true, reml_priors, reml_priors_var, -2.0, -2.0, no_constrain, true, true); in mlma_loco()
476 reml_priors_var=_varcmp; in mlma_loco()
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| H A D | bivar_reml.cpp | 15 …nt reml_mtd, int MaxIter, vector<double> reml_priors, vector<double> reml_priors_var, vector<int> … in fit_bivar_reml() argument
288 …reml(pred_rand_eff, est_fix_eff, reml_priors, reml_priors_var, prevalence, prevalence2, no_constra… in fit_bivar_reml()
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