| /dports/biology/migrate/migrate-3.6.11/src/ |
| H A D | joint-chains.c | 59 MYREAL reps = LOG ((MYREAL) (nr->repstop - nr->repstart)); in create_multiapg0()
61 tmp = (MYREAL *) mycalloc (nr->repstop, sizeof (MYREAL)); in create_multiapg0()
66 for (r = nr->repstart; r < nr->repstop; r++) in create_multiapg0()
78 for (r = nr->repstart; r < nr->repstop; r++) in create_multiapg0()
96 long repdiff = nr->repstop - nr->repstart; in interpolate_like()
122 for (r = nr->repstart; r < nr->repstop; r++) in interpolate_like()
125 for (j = nr->repstart; j < nr->repstop; j++) in interpolate_like()
144 for (j = nr->repstart; j < nr->repstop; j++) in interpolate_like()
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| H A D | combroyden2.c | 205 long repstart, repstop; in estimateParameter() local
220 &nr->repstop); in estimateParameter()
645 for (r = repstart; r < repstop; r++) in calc_meanparam()
1131 long *repstop) in set_replicates() argument
1136 *repstop = (repkind == SINGLECHAIN) ? rep + 1 : world->repstop; in set_replicates()
1141 *repstop = 1; in set_replicates()
1241 for (r = repstart; r < repstop; r++) in setup_parameter0_standard()
1254 for (r = repstart; r < repstop; r++) in setup_parameter0_standard()
1335 long repstart, repstop; in maximize() local
1388 nr->repstop = repstop; in maximize()
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| H A D | combroyden.h | 62 long *repstart, long *repstop);
71 long repstop, long loci, long kind,
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| H A D | lrt.c | 113 long repstop = world->repstop; in print_lratio_test() local
127 for (r = 0; r < repstop; r++) in print_lratio_test()
212 for (j = 0; j < world->repstop; j++) in test_loci_like()
457 long repstop = !world->options->replicate ? 0 : in set_test_param() local
492 meanparam = world->atl[repstop][0].param; in set_test_param()
743 long repstop = !world->options->replicate ? 0 :
773 meanparam = world->atl[repstop][0].param;
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| H A D | aic.c | 245 long repstop=0; in akaike_information() local
260 set_replicates (world, world->repkind, world->rep, &repstart, &repstop); in akaike_information()
269 mle = world->atl[repstop == 1 ? 0 : repstop][0].param_like; in akaike_information()
276 SETUPPARAM0 (world, nr, world->repkind, repstart, repstop, in akaike_information()
284 …memcpy (aic.param0, nr->world->atl[repstop ==1 ? 0 : repstop][nr->world->locus].param, sizeof (MYR… in akaike_information()
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| H A D | migrate_mpi.c | 935 long repstop; in mpi_startparam_worker() local
946 &repstart, &repstop); in mpi_startparam_worker()
951 for (r = repstart; r < repstop; r++) in mpi_startparam_worker()
959 tmp[i] /= locidone * (repstop-repstart); in mpi_startparam_worker()
1007 long repstop; in mpi_gmax_worker() local
1019 &repstart, &repstop); in mpi_gmax_worker()
1024 for (r = repstart; r < repstop; r++) in mpi_gmax_worker()
1270 long repstop; in mpi_maximize_worker() local
1292 repstart, repstop, world->loci, kind, TRUE); in mpi_maximize_worker()
3093 long repstop; in unpack_single_bayes_buffer() local
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| H A D | migrate_mpi.h | 158 long repstart, long repstop, long loci, long kind,
182 long repstart, long repstop, long loci,
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| H A D | broyden.c | 111 void alloc_apg (MYREAL ****apg, long repstop, long loci, long G);
384 nr->repstop = (repkind == SINGLECHAIN) ? rep + 1 : world->repstop; in create_nr()
453 alloc_apg (MYREAL ****apg, long repstop, long loci, long G) in alloc_apg() argument
456 (*apg) = (MYREAL ***) mycalloc (repstop, sizeof (MYREAL **)); in alloc_apg()
457 for (j = 0; j < repstop; j++) in alloc_apg()
476 nr->repstop = (repkind == SINGLECHAIN) ? rep + 1 : world->repstop; in reuse_nr()
631 for (r = nr->repstart; r < nr->repstop; r++) in calc_locus_like()
682 for (r = nr->repstart; r < nr->repstop; r++) in calc_locus_like()
1123 for (r = nr->repstart; r < nr->repstop; r++) in gradient()
1230 for (r = nr->repstart; r < nr->repstop; r++) in gradient_longsum()
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| H A D | broyden.h | 51 extern void alloc_apg (MYREAL ****apg, long repstop, long loci, long G);
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| H A D | world.c | 676 rep = world->repstop = in init_world()
826 alloc_apg (&world->apg0, world->repstop, world->loci, in init_world()
829 alloc_apg (&world->apg, world->repstop, world->loci, in init_world()
834 alloc_apg (&world->apg0, world->repstop, world->loci, in init_world()
837 alloc_apg (&world->apg, world->repstop, world->loci, in init_world()
1222 long repstart, repstop; in print_alpha_curve() local
1264 nr->repstop = repstop; in print_alpha_curve()
1268 SETUPPARAM0 (world, nr, world->repkind, repstart, repstop, in print_alpha_curve()
1525 for (j = 0; j < world->repstop; j++) in free_world()
1663 for (j = world->repstop - 1; j >= 0; j--) in free_world()
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| H A D | uep.c | 663 for (tree = 0; tree < world->atl[world->repstop - 1][locus].T - 1; in calc_uep_popprob()
722 for (tree = 0; tree < world->atl[world->repstop - 1][locus].T - 1; in calc_uep_timeprob()
752 for (tree = 0; tree < world->atl[world->repstop - 1][locus].T - 1; in normalize_uep()
756 copies += world->atl[world->repstop - 1][locus].tl[tree].copies; in normalize_uep()
766 ((MYREAL) world->atl[world->repstop - 1][locus].tl[tree]. in normalize_uep()
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| H A D | main.c | 3040 long repstop = 1; in find_loci_cutoffs() local
3042 set_replicates (world, world->repkind, world->rep, &repstart, &repstop); in find_loci_cutoffs()
3046 for (r = repstart; r < repstop; r++) in find_loci_cutoffs()
3064 long repstop = 1; in find_replicate_cutoffs() local
3066 set_replicates (world, world->repkind, world->rep, &repstart, &repstop); in find_replicate_cutoffs()
3068 for (r = repstart; r < repstop; r++) in find_replicate_cutoffs()
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| H A D | migration.h | 1186 long repstop; member
1294 long repstop; member
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| H A D | profile.c | 323 SETUPPARAM0 (world, nr, world->repkind, nr->repstart, nr->repstop, in print_profile_likelihood()
1034 long rep = world->options->replicate ? (world->loci > 1 ? 0 : world->repstop) : 0; in profile_max_percentiles()
1139 world->options->replicate ? (world->loci > 1 ? 0 : world->repstop) : 0; in profile_max_spline()
1915 long rep = world->options->replicate ? (world->loci > 1 ? 0 : world->repstop) : 0; in master_gridder()
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| H A D | gammalike.c | 460 for (rep = nr->repstart; rep < nr->repstop; rep++) in gamma_parts_gradient()
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| H A D | pretty.c | 4682 long rep = world->loci > 1 ? 0 : (wopt->replicate ? world->repstop : 0); in pdf_print_results()
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| /dports/editors/cudatext/CudaText-1.151.0/app/readme/wiki/ |
| H A D | cudatext_api.wiki | 3155 ** "repstop": Replace next, and don't find
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