Searched refs:requireProperPair (Results 1 – 1 of 1) sorted by relevance
735 public static int insertSizeMapped(SamLine r1, SamLine r2, boolean requireProperPair){ in insertSizeMapped() argument737 …if(!r1.mapped() || !r2.mapped() || !r1.pairedOnSameChrom() || (requireProperPair && !r1.properPair… in insertSizeMapped()745 if(r1.strand()==1){return insertSizeMapped(r2, r1, requireProperPair);} in insertSizeMapped()747 return insertSizeMapped(r2, r1, requireProperPair); in insertSizeMapped()