/dports/biology/seqan1/seqan-1.3.1/seqan/refinement/ |
H A D | graph_algorithm_refine_aligngraph.h | 211 TScoreValue ret_score = 0; in _getRefinedMatchScore() local 228 ret_score += rest * scoreGapExtend(score_type); in _getRefinedMatchScore() 231 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore() 232 return ret_score; //and done! in _getRefinedMatchScore() 237 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore() 238 return ret_score; //and done! in _getRefinedMatchScore() 251 ret_score += (next_pos_j-pos_j) * scoreGapExtend(score_type); in _getRefinedMatchScore() 275 ret_score += rest * scoreGapExtend(score_type); in _getRefinedMatchScore() 278 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore() 279 return ret_score; //and done! in _getRefinedMatchScore() [all …]
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H A D | graph_algorithm_refine_align.h | 127 TScoreValue ret_score = 0; in _getRefinedMatchScore() local 131 ret_score += scoreGapExtend(score_type); in _getRefinedMatchScore() 133 ret_score += score(score_type,getValue(row0_it),getValue(row1_it)); in _getRefinedMatchScore() 138 return ret_score; in _getRefinedMatchScore()
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H A D | graph_algorithm_refine_fragment.h | 178 TScoreValue ret_score = 0; in _getRefinedMatchScore() local 181 ret_score += score(score_type,*label_it0,*label_it1); in _getRefinedMatchScore() 186 return ret_score; in _getRefinedMatchScore()
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/graph_align/ |
H A D | graph_algorithm_refine_aligngraph.h | 209 TScoreValue ret_score = 0; in _getRefinedMatchScore() local 225 ret_score += rest * scoreGapExtend(score_type); in _getRefinedMatchScore() 228 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore() 229 return ret_score; //and done! in _getRefinedMatchScore() 234 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore() 235 return ret_score; //and done! in _getRefinedMatchScore() 248 ret_score += (next_pos_j-pos_j) * scoreGapExtend(score_type); in _getRefinedMatchScore() 272 ret_score += rest * scoreGapExtend(score_type); in _getRefinedMatchScore() 275 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore() 276 return ret_score; //and done! in _getRefinedMatchScore() [all …]
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H A D | graph_algorithm_refine_align.h | 137 TScoreValue ret_score = 0; in _getRefinedMatchScore() local 141 ret_score += scoreGapExtend(score_type); in _getRefinedMatchScore() 143 ret_score += score(score_type,getValue(row0_it),getValue(row1_it)); in _getRefinedMatchScore() 148 return ret_score; in _getRefinedMatchScore()
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H A D | graph_algorithm_refine_fragment.h | 171 TScoreValue ret_score = 0; in _getRefinedMatchScore() local 174 ret_score += score(score_type,*label_it0,*label_it1); in _getRefinedMatchScore() 179 return ret_score; in _getRefinedMatchScore()
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/graph_align/ |
H A D | graph_algorithm_refine_aligngraph.h | 209 TScoreValue ret_score = 0; in _getRefinedMatchScore() local 225 ret_score += rest * scoreGapExtend(score_type); in _getRefinedMatchScore() 228 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore() 229 return ret_score; //and done! in _getRefinedMatchScore() 234 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore() 235 return ret_score; //and done! in _getRefinedMatchScore() 248 ret_score += (next_pos_j-pos_j) * scoreGapExtend(score_type); in _getRefinedMatchScore() 272 ret_score += rest * scoreGapExtend(score_type); in _getRefinedMatchScore() 275 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore() 276 return ret_score; //and done! in _getRefinedMatchScore() [all …]
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H A D | graph_algorithm_refine_align.h | 137 TScoreValue ret_score = 0; in _getRefinedMatchScore() local 141 ret_score += scoreGapExtend(score_type); in _getRefinedMatchScore() 143 ret_score += score(score_type,getValue(row0_it),getValue(row1_it)); in _getRefinedMatchScore() 148 return ret_score; in _getRefinedMatchScore()
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H A D | graph_algorithm_refine_fragment.h | 171 TScoreValue ret_score = 0; in _getRefinedMatchScore() local 174 ret_score += score(score_type,*label_it0,*label_it1); in _getRefinedMatchScore() 179 return ret_score; in _getRefinedMatchScore()
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_align/ |
H A D | graph_algorithm_refine_aligngraph.h | 212 TScoreValue ret_score = 0; in _getRefinedMatchScore() local 228 ret_score += rest * scoreGapExtend(score_type); in _getRefinedMatchScore() 231 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore() 232 return ret_score; //and done! in _getRefinedMatchScore() 237 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore() 238 return ret_score; //and done! in _getRefinedMatchScore() 251 ret_score += (next_pos_j-pos_j) * scoreGapExtend(score_type); in _getRefinedMatchScore() 275 ret_score += rest * scoreGapExtend(score_type); in _getRefinedMatchScore() 278 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore() 279 return ret_score; //and done! in _getRefinedMatchScore() [all …]
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H A D | graph_algorithm_refine_align.h | 140 TScoreValue ret_score = 0; in _getRefinedMatchScore() local 144 ret_score += scoreGapExtend(score_type); in _getRefinedMatchScore() 146 ret_score += score(score_type,getValue(row0_it),getValue(row1_it)); in _getRefinedMatchScore() 151 return ret_score; in _getRefinedMatchScore()
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H A D | graph_algorithm_refine_fragment.h | 176 TScoreValue ret_score = 0; in _getRefinedMatchScore() local 179 ret_score += score(score_type,*label_it0,*label_it1); in _getRefinedMatchScore() 184 return ret_score; in _getRefinedMatchScore()
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/dports/multimedia/v4l-utils/linux-5.13-rc2/drivers/acpi/ |
H A D | glue.c | 118 int ret_score = 0; in acpi_find_child_device() local 148 if (!ret_score) { in acpi_find_child_device() 149 ret_score = find_child_checks(ret, check_children); in acpi_find_child_device() 150 if (ret_score == FIND_CHILD_MAX_SCORE) in acpi_find_child_device() 156 } else if (score > ret_score) { in acpi_find_child_device() 158 ret_score = score; in acpi_find_child_device()
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/dports/multimedia/v4l_compat/linux-5.13-rc2/drivers/acpi/ |
H A D | glue.c | 118 int ret_score = 0; in acpi_find_child_device() local 148 if (!ret_score) { in acpi_find_child_device() 149 ret_score = find_child_checks(ret, check_children); in acpi_find_child_device() 150 if (ret_score == FIND_CHILD_MAX_SCORE) in acpi_find_child_device() 156 } else if (score > ret_score) { in acpi_find_child_device() 158 ret_score = score; in acpi_find_child_device()
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/dports/multimedia/libv4l/linux-5.13-rc2/drivers/acpi/ |
H A D | glue.c | 118 int ret_score = 0; in acpi_find_child_device() local 148 if (!ret_score) { in acpi_find_child_device() 149 ret_score = find_child_checks(ret, check_children); in acpi_find_child_device() 150 if (ret_score == FIND_CHILD_MAX_SCORE) in acpi_find_child_device() 156 } else if (score > ret_score) { in acpi_find_child_device() 158 ret_score = score; in acpi_find_child_device()
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/dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/src/ |
H A D | scorestack.c | 76 …tic int pop_hitstack(struct hitstack_s *hstack, int *ret_left, int *ret_right, double *ret_score); 225 double *ret_score) in pop_hitstack() argument 236 *ret_score = old->score; in pop_hitstack()
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H A D | viterbi.c | 74 double *ret_score, in ViterbiAlign() argument 100 *ret_score = ((double) bmx[0][N][N] / INTPRECISION); in ViterbiAlign() 102 printf("have a score of %.2f, starting traceback\n", *ret_score); in ViterbiAlign() 118 callRequest(MPViterbiAlign, 24, icm, &statenum, seq, &N, ret_score, ret_trace); in ViterbiAlign()
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H A D | funcs.h | 147 double *ret_score, struct trace_s **ret_trace); 205 double *ret_score, struct trace_s **ret_trace);
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H A D | smallviterbi.c | 131 double *ret_score, in SmallViterbiAlign() argument 160 *ret_score = ((double) bmx[0][N][N] / INTPRECISION); in SmallViterbiAlign() 162 printf("have a score of %.2f, starting traceback\n", *ret_score); in SmallViterbiAlign()
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/dports/biology/seqan1/seqan-1.3.1/seqan/align/ |
H A D | align_algorithms.h | 235 …TScoreValue ret_score = _globalAlignment(trace, stringSet(align_), score_, tag_align_config, tag_… in globalAlignment() local 239 return ret_score; in globalAlignment()
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