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/dports/biology/seqan1/seqan-1.3.1/seqan/refinement/
H A Dgraph_algorithm_refine_aligngraph.h211 TScoreValue ret_score = 0; in _getRefinedMatchScore() local
228 ret_score += rest * scoreGapExtend(score_type); in _getRefinedMatchScore()
231 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore()
232 return ret_score; //and done! in _getRefinedMatchScore()
237 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore()
238 return ret_score; //and done! in _getRefinedMatchScore()
251 ret_score += (next_pos_j-pos_j) * scoreGapExtend(score_type); in _getRefinedMatchScore()
275 ret_score += rest * scoreGapExtend(score_type); in _getRefinedMatchScore()
278 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore()
279 return ret_score; //and done! in _getRefinedMatchScore()
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H A Dgraph_algorithm_refine_align.h127 TScoreValue ret_score = 0; in _getRefinedMatchScore() local
131 ret_score += scoreGapExtend(score_type); in _getRefinedMatchScore()
133 ret_score += score(score_type,getValue(row0_it),getValue(row1_it)); in _getRefinedMatchScore()
138 return ret_score; in _getRefinedMatchScore()
H A Dgraph_algorithm_refine_fragment.h178 TScoreValue ret_score = 0; in _getRefinedMatchScore() local
181 ret_score += score(score_type,*label_it0,*label_it1); in _getRefinedMatchScore()
186 return ret_score; in _getRefinedMatchScore()
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/graph_align/
H A Dgraph_algorithm_refine_aligngraph.h209 TScoreValue ret_score = 0; in _getRefinedMatchScore() local
225 ret_score += rest * scoreGapExtend(score_type); in _getRefinedMatchScore()
228 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore()
229 return ret_score; //and done! in _getRefinedMatchScore()
234 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore()
235 return ret_score; //and done! in _getRefinedMatchScore()
248 ret_score += (next_pos_j-pos_j) * scoreGapExtend(score_type); in _getRefinedMatchScore()
272 ret_score += rest * scoreGapExtend(score_type); in _getRefinedMatchScore()
275 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore()
276 return ret_score; //and done! in _getRefinedMatchScore()
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H A Dgraph_algorithm_refine_align.h137 TScoreValue ret_score = 0; in _getRefinedMatchScore() local
141 ret_score += scoreGapExtend(score_type); in _getRefinedMatchScore()
143 ret_score += score(score_type,getValue(row0_it),getValue(row1_it)); in _getRefinedMatchScore()
148 return ret_score; in _getRefinedMatchScore()
H A Dgraph_algorithm_refine_fragment.h171 TScoreValue ret_score = 0; in _getRefinedMatchScore() local
174 ret_score += score(score_type,*label_it0,*label_it1); in _getRefinedMatchScore()
179 return ret_score; in _getRefinedMatchScore()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/graph_align/
H A Dgraph_algorithm_refine_aligngraph.h209 TScoreValue ret_score = 0; in _getRefinedMatchScore() local
225 ret_score += rest * scoreGapExtend(score_type); in _getRefinedMatchScore()
228 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore()
229 return ret_score; //and done! in _getRefinedMatchScore()
234 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore()
235 return ret_score; //and done! in _getRefinedMatchScore()
248 ret_score += (next_pos_j-pos_j) * scoreGapExtend(score_type); in _getRefinedMatchScore()
272 ret_score += rest * scoreGapExtend(score_type); in _getRefinedMatchScore()
275 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore()
276 return ret_score; //and done! in _getRefinedMatchScore()
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H A Dgraph_algorithm_refine_align.h137 TScoreValue ret_score = 0; in _getRefinedMatchScore() local
141 ret_score += scoreGapExtend(score_type); in _getRefinedMatchScore()
143 ret_score += score(score_type,getValue(row0_it),getValue(row1_it)); in _getRefinedMatchScore()
148 return ret_score; in _getRefinedMatchScore()
H A Dgraph_algorithm_refine_fragment.h171 TScoreValue ret_score = 0; in _getRefinedMatchScore() local
174 ret_score += score(score_type,*label_it0,*label_it1); in _getRefinedMatchScore()
179 return ret_score; in _getRefinedMatchScore()
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_align/
H A Dgraph_algorithm_refine_aligngraph.h212 TScoreValue ret_score = 0; in _getRefinedMatchScore() local
228 ret_score += rest * scoreGapExtend(score_type); in _getRefinedMatchScore()
231 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore()
232 return ret_score; //and done! in _getRefinedMatchScore()
237 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore()
238 return ret_score; //and done! in _getRefinedMatchScore()
251 ret_score += (next_pos_j-pos_j) * scoreGapExtend(score_type); in _getRefinedMatchScore()
275 ret_score += rest * scoreGapExtend(score_type); in _getRefinedMatchScore()
278 ret_score += len * scoreGapExtend(score_type); in _getRefinedMatchScore()
279 return ret_score; //and done! in _getRefinedMatchScore()
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H A Dgraph_algorithm_refine_align.h140 TScoreValue ret_score = 0; in _getRefinedMatchScore() local
144 ret_score += scoreGapExtend(score_type); in _getRefinedMatchScore()
146 ret_score += score(score_type,getValue(row0_it),getValue(row1_it)); in _getRefinedMatchScore()
151 return ret_score; in _getRefinedMatchScore()
H A Dgraph_algorithm_refine_fragment.h176 TScoreValue ret_score = 0; in _getRefinedMatchScore() local
179 ret_score += score(score_type,*label_it0,*label_it1); in _getRefinedMatchScore()
184 return ret_score; in _getRefinedMatchScore()
/dports/multimedia/v4l-utils/linux-5.13-rc2/drivers/acpi/
H A Dglue.c118 int ret_score = 0; in acpi_find_child_device() local
148 if (!ret_score) { in acpi_find_child_device()
149 ret_score = find_child_checks(ret, check_children); in acpi_find_child_device()
150 if (ret_score == FIND_CHILD_MAX_SCORE) in acpi_find_child_device()
156 } else if (score > ret_score) { in acpi_find_child_device()
158 ret_score = score; in acpi_find_child_device()
/dports/multimedia/v4l_compat/linux-5.13-rc2/drivers/acpi/
H A Dglue.c118 int ret_score = 0; in acpi_find_child_device() local
148 if (!ret_score) { in acpi_find_child_device()
149 ret_score = find_child_checks(ret, check_children); in acpi_find_child_device()
150 if (ret_score == FIND_CHILD_MAX_SCORE) in acpi_find_child_device()
156 } else if (score > ret_score) { in acpi_find_child_device()
158 ret_score = score; in acpi_find_child_device()
/dports/multimedia/libv4l/linux-5.13-rc2/drivers/acpi/
H A Dglue.c118 int ret_score = 0; in acpi_find_child_device() local
148 if (!ret_score) { in acpi_find_child_device()
149 ret_score = find_child_checks(ret, check_children); in acpi_find_child_device()
150 if (ret_score == FIND_CHILD_MAX_SCORE) in acpi_find_child_device()
156 } else if (score > ret_score) { in acpi_find_child_device()
158 ret_score = score; in acpi_find_child_device()
/dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/src/
H A Dscorestack.c76 …tic int pop_hitstack(struct hitstack_s *hstack, int *ret_left, int *ret_right, double *ret_score);
225 double *ret_score) in pop_hitstack() argument
236 *ret_score = old->score; in pop_hitstack()
H A Dviterbi.c74 double *ret_score, in ViterbiAlign() argument
100 *ret_score = ((double) bmx[0][N][N] / INTPRECISION); in ViterbiAlign()
102 printf("have a score of %.2f, starting traceback\n", *ret_score); in ViterbiAlign()
118 callRequest(MPViterbiAlign, 24, icm, &statenum, seq, &N, ret_score, ret_trace); in ViterbiAlign()
H A Dfuncs.h147 double *ret_score, struct trace_s **ret_trace);
205 double *ret_score, struct trace_s **ret_trace);
H A Dsmallviterbi.c131 double *ret_score, in SmallViterbiAlign() argument
160 *ret_score = ((double) bmx[0][N][N] / INTPRECISION); in SmallViterbiAlign()
162 printf("have a score of %.2f, starting traceback\n", *ret_score); in SmallViterbiAlign()
/dports/biology/seqan1/seqan-1.3.1/seqan/align/
H A Dalign_algorithms.h235 …TScoreValue ret_score = _globalAlignment(trace, stringSet(align_), score_, tag_align_config, tag_… in globalAlignment() local
239 return ret_score; in globalAlignment()