Searched refs:retrievalOffset (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/ncbi-toolkit/ncbi/biostruc/cdd/ |
| H A D | cddposutil.c | 1087 …Int4 queryOffset, subjectOffset, retrievalOffset; /*offsets needed to make a match align*/ in CddposDenseDiagDemographics() local
1115 s = CddGetSequenceWithDenseDiag(curSegs, FALSE, &retrievalOffset, &subjectLength); in CddposDenseDiagDemographics()
1119 subjectOffset = curSegs->starts[1] - retrievalOffset; in CddposDenseDiagDemographics()
1154 … Int4 queryOffset, subjectOffset, retrievalOffset; /*offsets needed to make a match align*/ in CddposDemographics() local
1193 s = CddGetSequenceWithDenseSeg(curSegs, FALSE, &retrievalOffset, &subjectLength); in CddposDemographics()
1199 subjectOffset = curSegs->starts[startS] - retrievalOffset; in CddposDemographics()
2227 Int4 index, splace, qplace, retrievalOffset, subjectLength; in CddposReadAlignment() local
2254 s = CddGetSequenceWithDenseDiag(ddp,FALSE, &retrievalOffset, &subjectLength); in CddposReadAlignment()
2257 subjectOffset = ddp->starts[1] - retrievalOffset; in CddposReadAlignment()
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | posit.c | 788 Int4 queryOffset, subjectOffset, retrievalOffset; /*offsets needed in posConvergenceTest() local
844 s = GetSequenceWithDenseSeg(curSegs, FALSE, &retrievalOffset, &subjectLength); in posConvergenceTest()
859 subjectOffset = curSegs->starts[startS] - retrievalOffset; in posConvergenceTest()
1053 Int4 retrievalOffset; /* retrieval offset */ in countNumSeq() local
1086 s = GetSequenceWithDenseSeg(curSegs, FALSE, &retrievalOffset, &subjectLength); in countNumSeq()
1113 Int4 queryOffset, subjectOffset, retrievalOffset; /*offsets needed to make a match align*/ in posDemographics() local
1172 s = GetSequenceWithDenseSeg(curSegs, FALSE, &retrievalOffset, &subjectLength); in posDemographics()
1190 subjectOffset = curSegs->starts[startS] - retrievalOffset; in posDemographics()
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