/dports/math/sisl/SISL-SISL-4.6.0-44-g9114631/src/ |
H A D | s6idkpt.c | 55 s6idkpt(SISLIntdat **pintdat,SISLIntpt **pintpt,SISLIntpt **rtpt,SISLIntpt **rfpt,int *jstat) in s6idkpt() argument 57 void s6idkpt(pintdat,pintpt,rtpt,rfpt,jstat) in s6idkpt() 61 SISLIntpt **rfpt; 108 (*rtpt) = (*rfpt) = SISL_NULL; 132 (*rfpt) = (*pintdat)->vpoint[ki];
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/dports/biology/ncbi-toolkit/ncbi/biostruc/cdd/ |
H A D | thrdslou.c | 78 rf=cdf->sll.rfpt[cs]; in slou() 90 nt=cdf->sll.rfpt[ns]+sli->co[ns]; in slou() 97 nt=cdf->sll.rfpt[ns]-sli->no[ns]; in slou() 109 ci=cdf->sll.rfpt[cs]-sli->no[cs]; in slou()
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H A D | thrdcpll.c | 119 mn=cdf->sll.rfpt[i]-(sai->al[i]-le); in cpll() 128 mx=cdf->sll.rfpt[i]+(le-sai->al[i]); in cpll() 157 t1=qsq->sq[sai->al[s1]-(cdf->sll.rfpt[s1]-r1)]; in cpll() 162 t2=qsq->sq[sai->al[s2]-(cdf->sll.rfpt[s2]-r2)]; in cpll() 186 t1=qsq->sq[sai->al[s1]-(cdf->sll.rfpt[s1]-r1)]; in cpll() 212 t1=qsq->sq[sai->al[s1]-(cdf->sll.rfpt[s1]-r1)]; in cpll()
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H A D | thrdzsc.c | 188 mn=cdf->sll.rfpt[i]-ttb->no[i][i_max]; in zsc() 189 mx=cdf->sll.rfpt[i]+ttb->co[i][i_max]; in zsc() 247 t1=sq[ttb->al[s1][i_max]-(cdf->sll.rfpt[s1]-r1)]; in zsc() 252 t2=sq[ttb->al[s2][i_max]-(cdf->sll.rfpt[s2]-r2)]; in zsc() 270 t1=sq[ttb->al[s1][i_max]-(cdf->sll.rfpt[s1]-r1)]; in zsc() 289 t1=sq[ttb->al[s1][i_max]-(cdf->sll.rfpt[s1]-r1)]; in zsc() 300 mn=cdf->sll.rfpt[i]-ttb->no[i][i_max]; in zsc() 301 mx=cdf->sll.rfpt[i]+ttb->co[i][i_max]; in zsc() 305 t1=sq[ttb->al[i][i_max]-(cdf->sll.rfpt[i]-j)]; in zsc()
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H A D | thrdslo0.c | 179 lm1=mtf->mll[cdf->sll.rfpt[i]+co[i]][cdf->sll.rfpt[i+1]-no[i+1]]; in slo0() 253 lm1=mtf->mll[cdf->sll.rfpt[i-1]+co[i-1]][cdf->sll.rfpt[i]-no[i]]; in slo0()
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H A D | thrdslor.c | 112 cr=cdf->sll.rfpt[cs]; in slor() 129 nr=cdf->sll.rfpt[ns]+sli->co[ns]; in slor() 245 nr=cdf->sll.rfpt[ns]-sli->no[ns]; in slor()
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H A D | thrdspea.c | 149 mn=cdf->sll.rfpt[n]-sli->no[n]; in spea() 150 mx=cdf->sll.rfpt[n]+sli->co[n]; in spea()
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H A D | thrdspel.c | 161 mn=cdf->sll.rfpt[cs]-sli->no[cs]; in spel() 162 mx=cdf->sll.rfpt[cs]+sli->co[cs]; in spel()
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H A D | thrdcxei.c | 190 mn=cdf->sll.rfpt[i]-sli->no[i]; in cxei() 191 mx=cdf->sll.rfpt[i]+sli->co[i]; in cxei()
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H A D | thrdsalu.c | 73 ci=cdf->sll.rfpt[cs]-sli->no[cs]; in salu()
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H A D | thrdcprl.c | 120 mn=cdf->sll.rfpt[i]-cdf->sll.nomx[i]; in cprl() 121 mx=cdf->sll.rfpt[i]+cdf->sll.comx[i]; in cprl()
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H A D | thrdatd.h | 98 int *rfpt; /* Index of central reference residue */ member
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/threader/ |
H A D | thrdslou.c | 67 rf=cdf->sll.rfpt[cs]; in slou() 79 nt=cdf->sll.rfpt[ns]+sli->co[ns]; in slou() 86 nt=cdf->sll.rfpt[ns]-sli->no[ns]; in slou() 98 ci=cdf->sll.rfpt[cs]-sli->no[cs]; in slou()
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H A D | thrdcpll.c | 108 mn=cdf->sll.rfpt[i]-(sai->al[i]-le); in cpll() 117 mx=cdf->sll.rfpt[i]+(le-sai->al[i]); in cpll() 146 t1=qsq->sq[sai->al[s1]-(cdf->sll.rfpt[s1]-r1)]; in cpll() 151 t2=qsq->sq[sai->al[s2]-(cdf->sll.rfpt[s2]-r2)]; in cpll() 175 t1=qsq->sq[sai->al[s1]-(cdf->sll.rfpt[s1]-r1)]; in cpll() 201 t1=qsq->sq[sai->al[s1]-(cdf->sll.rfpt[s1]-r1)]; in cpll()
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H A D | thrdzsc.cpp | 187 mn=cdf->sll.rfpt[i]-ttb->no[i][i_max]; in zsc() 188 mx=cdf->sll.rfpt[i]+ttb->co[i][i_max]; in zsc() 246 t1=sq[ttb->al[s1][i_max]-(cdf->sll.rfpt[s1]-r1)]; in zsc() 251 t2=sq[ttb->al[s2][i_max]-(cdf->sll.rfpt[s2]-r2)]; in zsc() 269 t1=sq[ttb->al[s1][i_max]-(cdf->sll.rfpt[s1]-r1)]; in zsc() 288 t1=sq[ttb->al[s1][i_max]-(cdf->sll.rfpt[s1]-r1)]; in zsc() 299 mn=cdf->sll.rfpt[i]-ttb->no[i][i_max]; in zsc() 300 mx=cdf->sll.rfpt[i]+ttb->co[i][i_max]; in zsc() 304 t1=sq[ttb->al[i][i_max]-(cdf->sll.rfpt[i]-j)]; in zsc()
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H A D | thrdslo0.c | 171 lm1=mtf->mll[cdf->sll.rfpt[i]+co[i]][cdf->sll.rfpt[i+1]-no[i+1]]; in slo0() 245 lm1=mtf->mll[cdf->sll.rfpt[i-1]+co[i-1]][cdf->sll.rfpt[i]-no[i]]; in slo0()
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H A D | thrdslor.c | 104 cr=cdf->sll.rfpt[cs]; in slor() 121 nr=cdf->sll.rfpt[ns]+sli->co[ns]; in slor() 237 nr=cdf->sll.rfpt[ns]-sli->no[ns]; in slor()
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H A D | thrdspea.c | 131 mn=cdf->sll.rfpt[n]-sli->no[n]; in spea() 132 mx=cdf->sll.rfpt[n]+sli->co[n]; in spea()
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H A D | thrdspel.c | 144 mn=cdf->sll.rfpt[cs]-sli->no[cs]; in spel() 145 mx=cdf->sll.rfpt[cs]+sli->co[cs]; in spel()
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H A D | thrdcxei.c | 170 mn=cdf->sll.rfpt[i]-sli->no[i]; in cxei() 171 mx=cdf->sll.rfpt[i]+sli->co[i]; in cxei()
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H A D | thrdsalu.c | 62 ci=cdf->sll.rfpt[cs]-sli->no[cs]; in salu()
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H A D | thrdcprl.c | 112 mn=cdf->sll.rfpt[i]-cdf->sll.nomx[i]; in cprl() 113 mx=cdf->sll.rfpt[i]+cdf->sll.comx[i]; in cprl()
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/dports/science/py-PyFR/pyfr-1.12.3/pyfr/plugins/ |
H A D | fluidforce.py | 121 rfpt = eles.plocfpts[fpts_idx, eidx] - morigin 122 rfpts[etype, fidx].append(rfpt)
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/cn3d/ |
H A D | cn3d_threader.cpp | 193 corDef->sll.rfpt[n] = mid; in CreateCorDef() 200 if (corDef->sll.rfpt[0] - corDef->sll.nomx[0] < 0) in CreateCorDef() 201 corDef->sll.nomx[0] = corDef->sll.rfpt[0]; in CreateCorDef() 205 if (corDef->sll.rfpt[alignedBlocks.size() - 1] + corDef->sll.comx[alignedBlocks.size() - 1] >= in CreateCorDef() 208 multiple->GetMaster()->Length() - corDef->sll.rfpt[alignedBlocks.size() - 1] - 1; in CreateCorDef() 774 corDef->sll.rfpt[block] - thdTbl->no[block][nResult], in CreateAlignmentFromThdTbl() 775 corDef->sll.rfpt[block] + thdTbl->co[block][nResult]); in CreateAlignmentFromThdTbl()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/structure/threader/ |
H A D | thrdatd.h | 69 int *rfpt; /* Index of central reference residue */ member
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