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Searched refs:rfpt (Results 1 – 25 of 36) sorted by relevance

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/dports/math/sisl/SISL-SISL-4.6.0-44-g9114631/src/
H A Ds6idkpt.c55 s6idkpt(SISLIntdat **pintdat,SISLIntpt **pintpt,SISLIntpt **rtpt,SISLIntpt **rfpt,int *jstat) in s6idkpt() argument
57 void s6idkpt(pintdat,pintpt,rtpt,rfpt,jstat) in s6idkpt()
61 SISLIntpt **rfpt;
108 (*rtpt) = (*rfpt) = SISL_NULL;
132 (*rfpt) = (*pintdat)->vpoint[ki];
/dports/biology/ncbi-toolkit/ncbi/biostruc/cdd/
H A Dthrdslou.c78 rf=cdf->sll.rfpt[cs]; in slou()
90 nt=cdf->sll.rfpt[ns]+sli->co[ns]; in slou()
97 nt=cdf->sll.rfpt[ns]-sli->no[ns]; in slou()
109 ci=cdf->sll.rfpt[cs]-sli->no[cs]; in slou()
H A Dthrdcpll.c119 mn=cdf->sll.rfpt[i]-(sai->al[i]-le); in cpll()
128 mx=cdf->sll.rfpt[i]+(le-sai->al[i]); in cpll()
157 t1=qsq->sq[sai->al[s1]-(cdf->sll.rfpt[s1]-r1)]; in cpll()
162 t2=qsq->sq[sai->al[s2]-(cdf->sll.rfpt[s2]-r2)]; in cpll()
186 t1=qsq->sq[sai->al[s1]-(cdf->sll.rfpt[s1]-r1)]; in cpll()
212 t1=qsq->sq[sai->al[s1]-(cdf->sll.rfpt[s1]-r1)]; in cpll()
H A Dthrdzsc.c188 mn=cdf->sll.rfpt[i]-ttb->no[i][i_max]; in zsc()
189 mx=cdf->sll.rfpt[i]+ttb->co[i][i_max]; in zsc()
247 t1=sq[ttb->al[s1][i_max]-(cdf->sll.rfpt[s1]-r1)]; in zsc()
252 t2=sq[ttb->al[s2][i_max]-(cdf->sll.rfpt[s2]-r2)]; in zsc()
270 t1=sq[ttb->al[s1][i_max]-(cdf->sll.rfpt[s1]-r1)]; in zsc()
289 t1=sq[ttb->al[s1][i_max]-(cdf->sll.rfpt[s1]-r1)]; in zsc()
300 mn=cdf->sll.rfpt[i]-ttb->no[i][i_max]; in zsc()
301 mx=cdf->sll.rfpt[i]+ttb->co[i][i_max]; in zsc()
305 t1=sq[ttb->al[i][i_max]-(cdf->sll.rfpt[i]-j)]; in zsc()
H A Dthrdslo0.c179 lm1=mtf->mll[cdf->sll.rfpt[i]+co[i]][cdf->sll.rfpt[i+1]-no[i+1]]; in slo0()
253 lm1=mtf->mll[cdf->sll.rfpt[i-1]+co[i-1]][cdf->sll.rfpt[i]-no[i]]; in slo0()
H A Dthrdslor.c112 cr=cdf->sll.rfpt[cs]; in slor()
129 nr=cdf->sll.rfpt[ns]+sli->co[ns]; in slor()
245 nr=cdf->sll.rfpt[ns]-sli->no[ns]; in slor()
H A Dthrdspea.c149 mn=cdf->sll.rfpt[n]-sli->no[n]; in spea()
150 mx=cdf->sll.rfpt[n]+sli->co[n]; in spea()
H A Dthrdspel.c161 mn=cdf->sll.rfpt[cs]-sli->no[cs]; in spel()
162 mx=cdf->sll.rfpt[cs]+sli->co[cs]; in spel()
H A Dthrdcxei.c190 mn=cdf->sll.rfpt[i]-sli->no[i]; in cxei()
191 mx=cdf->sll.rfpt[i]+sli->co[i]; in cxei()
H A Dthrdsalu.c73 ci=cdf->sll.rfpt[cs]-sli->no[cs]; in salu()
H A Dthrdcprl.c120 mn=cdf->sll.rfpt[i]-cdf->sll.nomx[i]; in cprl()
121 mx=cdf->sll.rfpt[i]+cdf->sll.comx[i]; in cprl()
H A Dthrdatd.h98 int *rfpt; /* Index of central reference residue */ member
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/threader/
H A Dthrdslou.c67 rf=cdf->sll.rfpt[cs]; in slou()
79 nt=cdf->sll.rfpt[ns]+sli->co[ns]; in slou()
86 nt=cdf->sll.rfpt[ns]-sli->no[ns]; in slou()
98 ci=cdf->sll.rfpt[cs]-sli->no[cs]; in slou()
H A Dthrdcpll.c108 mn=cdf->sll.rfpt[i]-(sai->al[i]-le); in cpll()
117 mx=cdf->sll.rfpt[i]+(le-sai->al[i]); in cpll()
146 t1=qsq->sq[sai->al[s1]-(cdf->sll.rfpt[s1]-r1)]; in cpll()
151 t2=qsq->sq[sai->al[s2]-(cdf->sll.rfpt[s2]-r2)]; in cpll()
175 t1=qsq->sq[sai->al[s1]-(cdf->sll.rfpt[s1]-r1)]; in cpll()
201 t1=qsq->sq[sai->al[s1]-(cdf->sll.rfpt[s1]-r1)]; in cpll()
H A Dthrdzsc.cpp187 mn=cdf->sll.rfpt[i]-ttb->no[i][i_max]; in zsc()
188 mx=cdf->sll.rfpt[i]+ttb->co[i][i_max]; in zsc()
246 t1=sq[ttb->al[s1][i_max]-(cdf->sll.rfpt[s1]-r1)]; in zsc()
251 t2=sq[ttb->al[s2][i_max]-(cdf->sll.rfpt[s2]-r2)]; in zsc()
269 t1=sq[ttb->al[s1][i_max]-(cdf->sll.rfpt[s1]-r1)]; in zsc()
288 t1=sq[ttb->al[s1][i_max]-(cdf->sll.rfpt[s1]-r1)]; in zsc()
299 mn=cdf->sll.rfpt[i]-ttb->no[i][i_max]; in zsc()
300 mx=cdf->sll.rfpt[i]+ttb->co[i][i_max]; in zsc()
304 t1=sq[ttb->al[i][i_max]-(cdf->sll.rfpt[i]-j)]; in zsc()
H A Dthrdslo0.c171 lm1=mtf->mll[cdf->sll.rfpt[i]+co[i]][cdf->sll.rfpt[i+1]-no[i+1]]; in slo0()
245 lm1=mtf->mll[cdf->sll.rfpt[i-1]+co[i-1]][cdf->sll.rfpt[i]-no[i]]; in slo0()
H A Dthrdslor.c104 cr=cdf->sll.rfpt[cs]; in slor()
121 nr=cdf->sll.rfpt[ns]+sli->co[ns]; in slor()
237 nr=cdf->sll.rfpt[ns]-sli->no[ns]; in slor()
H A Dthrdspea.c131 mn=cdf->sll.rfpt[n]-sli->no[n]; in spea()
132 mx=cdf->sll.rfpt[n]+sli->co[n]; in spea()
H A Dthrdspel.c144 mn=cdf->sll.rfpt[cs]-sli->no[cs]; in spel()
145 mx=cdf->sll.rfpt[cs]+sli->co[cs]; in spel()
H A Dthrdcxei.c170 mn=cdf->sll.rfpt[i]-sli->no[i]; in cxei()
171 mx=cdf->sll.rfpt[i]+sli->co[i]; in cxei()
H A Dthrdsalu.c62 ci=cdf->sll.rfpt[cs]-sli->no[cs]; in salu()
H A Dthrdcprl.c112 mn=cdf->sll.rfpt[i]-cdf->sll.nomx[i]; in cprl()
113 mx=cdf->sll.rfpt[i]+cdf->sll.comx[i]; in cprl()
/dports/science/py-PyFR/pyfr-1.12.3/pyfr/plugins/
H A Dfluidforce.py121 rfpt = eles.plocfpts[fpts_idx, eidx] - morigin
122 rfpts[etype, fidx].append(rfpt)
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/cn3d/
H A Dcn3d_threader.cpp193 corDef->sll.rfpt[n] = mid; in CreateCorDef()
200 if (corDef->sll.rfpt[0] - corDef->sll.nomx[0] < 0) in CreateCorDef()
201 corDef->sll.nomx[0] = corDef->sll.rfpt[0]; in CreateCorDef()
205 if (corDef->sll.rfpt[alignedBlocks.size() - 1] + corDef->sll.comx[alignedBlocks.size() - 1] >= in CreateCorDef()
208 multiple->GetMaster()->Length() - corDef->sll.rfpt[alignedBlocks.size() - 1] - 1; in CreateCorDef()
774 corDef->sll.rfpt[block] - thdTbl->no[block][nResult], in CreateAlignmentFromThdTbl()
775 corDef->sll.rfpt[block] + thdTbl->co[block][nResult]); in CreateAlignmentFromThdTbl()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/structure/threader/
H A Dthrdatd.h69 int *rfpt; /* Index of central reference residue */ member

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