| /dports/biology/seqan1/seqan-1.3.1/apps/razers/ |
| H A D | razers.h | 1222 TReadIterator ritEnd = end(read, Standard());
1238 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g)
1326 TReadIterator ritEnd = end(read, Standard());
1337 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g)
1470 TReadIterator ritEnd = end(read, Standard());
1491 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g)
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| H A D | razers_spliced.h | 736 TReadIterator ritEnd = end(read, Standard()); in matchVerify() local
755 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g) in matchVerify()
849 TReadIterator ritEnd = end(read, Standard())-1; in matchVerify() local
869 for(TReadIterator r = ritEnd; r >= ritBeg; --r, --g) in matchVerify()
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| /dports/biology/seqan1/seqan-1.3.1/apps/splazers/ |
| H A D | razers.h | 1243 TReadIterator ritEnd = end(read, Standard());
1259 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g)
1347 TReadIterator ritEnd = end(read, Standard());
1358 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g)
1491 TReadIterator ritEnd = end(read, Standard());
1512 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g)
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| H A D | razers_spliced.h | 721 TReadIterator ritEnd = end(read, Standard()); in matchVerify() local
742 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g) in matchVerify()
838 TReadIterator ritEnd = end(read, Standard())-1; in matchVerify() local
860 for(TReadIterator r = ritEnd; r >= ritBeg; --r, --g) in matchVerify()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/splazers/ |
| H A D | razers.h | 1234 TReadIterator ritEnd = end(read, Standard());
1250 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g)
1338 TReadIterator ritEnd = end(read, Standard());
1349 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g)
1482 TReadIterator ritEnd = end(read, Standard());
1503 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g)
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| H A D | razers_spliced.h | 900 TReadIterator ritEnd = end(read, Standard()); in matchVerify() local
921 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g) in matchVerify()
1017 TReadIterator ritEnd = end(read, Standard())-1; in matchVerify() local
1039 for(TReadIterator r = ritEnd; r >= ritBeg; --r, --g) in matchVerify()
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers/ |
| H A D | razers.h | 1275 TReadIterator ritEnd = end(read, Standard());
1291 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g)
1379 TReadIterator ritEnd = end(read, Standard());
1390 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g)
1523 TReadIterator ritEnd = end(read, Standard());
1544 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g)
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| H A D | razers_spliced.h | 738 TReadIterator ritEnd = end(read, Standard()); in matchVerify() local
757 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g) in matchVerify()
851 TReadIterator ritEnd = end(read, Standard())-1; in matchVerify() local
871 for(TReadIterator r = ritEnd; r >= ritBeg; --r, --g) in matchVerify()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/cd_utils/ |
| H A D | cuCdCore.cpp | 1040 set<int>::reverse_iterator rit, ritEnd; in EraseSequences() local
1068 ritEnd = indicesToErase.rend(); in EraseSequences()
1069 for (rit = indicesToErase.rbegin(); rit != ritEnd; ++rit) { in EraseSequences()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers3/ |
| H A D | razers.h | 1857 TReadIterator ritEnd = end(read, Standard());
1858 unsigned ndlLength = ritEnd - ritBeg;
1875 for (; r != ritEnd; ++r, ++g)
2000 TReadIterator ritEnd = end(read, Standard());
2001 unsigned ndlLength = ritEnd - ritBeg;
2024 for (TReadIterator r = ritBeg; r != ritEnd; ++r, ++g)
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| /dports/biology/seqan1/seqan-1.3.1/apps/razers2/ |
| H A D | razers.h | 1245 TReadIterator ritEnd = end(read, Standard());
1246 unsigned ndlLength = ritEnd - ritBeg;
1260 for(TReadIterator r = ritBeg; r != ritEnd; ++r, ++g)
|