| /dports/audio/dragonfly-reverb-lv2/dragonfly-reverb-3.2.5/common/freeverb/ |
| H A D | slimit_t.hpp | 43 _fv3_float_t rmsf = Rms.process(input); in _FV3_() local
49 buffer[bufidx] = rmsf-LookaheadRatio; in _FV3_()
50 rmsf = 0; in _FV3_()
52 if(rmsf < buffer[i]) rmsf = buffer[i]; in _FV3_()
57 _fv3_float_t theta = rmsf > env ? attackDelta : releaseDelta; in _FV3_()
58 env = (1.0-theta)*rmsf + theta*env; in _FV3_()
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| H A D | scomp_t.hpp | 39 _fv3_float_t rmsf = Rms.process(input); in _FV3_() local
40 _fv3_float_t theta = rmsf > env ? attackDelta : releaseDelta; in _FV3_()
41 env = (1.0-theta)*rmsf + theta*env; in _FV3_()
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| /dports/science/gromacs/gromacs-2021.4/python_packaging/test/ |
| H A D | test_fr18.py | 49 rmsf = gmx.tool.rmsf(trajectory=md.output.trajectory,
51 output_files = gmx.gather(rmsf.output.file).result()
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| H A D | test_fr19.py | 49 rmsf = gmx.rmsf(trajectory=md.output.trajectory,
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| H A D | test_fr21.py | 49 output_files = gmx.gather(rmsf.output.file).result()
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| H A D | test_fr05.py | 52 output_files = gmx.gather(rmsf.output.file['-o'])
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| H A D | test_fr20.py | 50 analysis = gmx.rmsf(trajectory=md.output.trajectory,
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| H A D | test_fr04.py | 55 rmsf = gmx.commandline_operation(
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| /dports/science/gromacs/gromacs-2021.4/src/gromacs/gmxana/ |
| H A D | gmx_rmsf.cpp | 264 double * rmsf, invcount, totmass; in gmx_rmsf() local
311 snew(rmsf, isize); in gmx_rmsf()
465 rmsf[i] = U[i][XX * DIM + XX] + U[i][YY * DIM + YY] + U[i][ZZ * DIM + ZZ]; in gmx_rmsf()
500 rmsf[i] * bfac, pdb_bfac); in gmx_rmsf()
515 std::sqrt(rmsf[i])); in gmx_rmsf()
523 pdbatoms->pdbinfo[index[i]].bfac = 800 * M_PI * M_PI / 3.0 * rmsf[i]; in gmx_rmsf()
530 rmsf[i] = (rmsd_x[i][XX] + rmsd_x[i][YY] + rmsd_x[i][ZZ]) / count; in gmx_rmsf()
534 average_residues(rmsf, nullptr, 0, isize, index, w_rls, &top.atoms); in gmx_rmsf()
545 std::sqrt(rmsf[i])); in gmx_rmsf()
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| /dports/science/py-MDAnalysis/MDAnalysis-0.19.2/MDAnalysis/analysis/ |
| H A D | density.py | 1071 rmsf = Bfactor2RMSF(group.bfactors)
1073 self.g = self._smear_rmsf(coord, grid, self.edges, rmsf)
1115 def _smear_rmsf(self, coordinates, grid, edges, rmsf): argument
1121 if rmsf[iwat] == 0:
1124 c=coord, sigma=rmsf[iwat])
1125 …"Smearing out atom position {0:4d}/{1:5d} with RMSF {2:4.2f} A\r".format(iwat + 1, N, rmsf[iwat]),)
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| H A D | rms.py | 815 self.rmsf = np.sqrt(self.sumsquares.sum(axis=1) / (k + 1))
817 if not (self.rmsf >= 0).all():
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| /dports/science/py-MDAnalysisTests/MDAnalysisTests-0.19.2/MDAnalysisTests/analysis/ |
| H A D | test_rms.py | 342 assert_almost_equal(rmsfs.rmsf, test_rmsfs, 5,
349 assert_almost_equal(rmsfs.rmsf, 0, 5,
364 assert_almost_equal(rmsfs.rmsf, 0, 5,
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| H A D | test_encore.py | 209 assert sum(rmsfs1.rmsf) > sum(rmsfs2.rmsf),"Ensemble aligned on all " \
228 assert sum(rmsfs1.rmsf) > sum(rmsfs2.rmsf), "Ensemble aligned on all " \
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| /dports/comms/wsjtz/wsjtx/lib/ |
| H A D | jt4_decode.f90 | 370 rmsf=0.
373 rmsf=sqrt(sqf/(nsum-1))
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| /dports/lang/gcc6-aux/gcc-6-20180516/gcc/testsuite/gcc.target/powerpc/ |
| H A D | pr58673-2.c | 193 real deviation[eoObsNR], prdev[eoObsNR], epot0, dist, rmsf; in do_coupling() local
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| /dports/lang/gcc12-devel/gcc-12-20211205/gcc/testsuite/gcc.target/powerpc/ |
| H A D | pr58673-2.c | 192 real deviation[eoObsNR], prdev[eoObsNR], epot0, dist, rmsf; in do_coupling() local
|
| /dports/lang/gcc8/gcc-8.5.0/gcc/testsuite/gcc.target/powerpc/ |
| H A D | pr58673-2.c | 193 real deviation[eoObsNR], prdev[eoObsNR], epot0, dist, rmsf; in do_coupling() local
|
| /dports/devel/riscv64-none-elf-gcc/gcc-8.4.0/gcc/testsuite/gcc.target/powerpc/ |
| H A D | pr58673-2.c | 193 real deviation[eoObsNR], prdev[eoObsNR], epot0, dist, rmsf; in do_coupling() local
|
| /dports/lang/gcc10/gcc-10.3.0/gcc/testsuite/gcc.target/powerpc/ |
| H A D | pr58673-2.c | 192 real deviation[eoObsNR], prdev[eoObsNR], epot0, dist, rmsf; in do_coupling() local
|
| /dports/lang/gcc11-devel/gcc-11-20211009/gcc/testsuite/gcc.target/powerpc/ |
| H A D | pr58673-2.c | 192 real deviation[eoObsNR], prdev[eoObsNR], epot0, dist, rmsf; in do_coupling() local
|
| /dports/lang/gcc11/gcc-11.2.0/gcc/testsuite/gcc.target/powerpc/ |
| H A D | pr58673-2.c | 192 real deviation[eoObsNR], prdev[eoObsNR], epot0, dist, rmsf; in do_coupling() local
|
| /dports/devel/arm-none-eabi-gcc/gcc-8.4.0/gcc/testsuite/gcc.target/powerpc/ |
| H A D | pr58673-2.c | 193 real deviation[eoObsNR], prdev[eoObsNR], epot0, dist, rmsf; in do_coupling() local
|
| /dports/devel/riscv32-unknown-elf-gcc/gcc-8.4.0/gcc/testsuite/gcc.target/powerpc/ |
| H A D | pr58673-2.c | 193 real deviation[eoObsNR], prdev[eoObsNR], epot0, dist, rmsf; in do_coupling() local
|
| /dports/devel/aarch64-none-elf-gcc/gcc-8.4.0/gcc/testsuite/gcc.target/powerpc/ |
| H A D | pr58673-2.c | 193 real deviation[eoObsNR], prdev[eoObsNR], epot0, dist, rmsf; in do_coupling() local
|
| /dports/lang/gcc48/gcc-4.8.5/gcc/testsuite/gcc.target/powerpc/ |
| H A D | pr58673-2.c | 189 real deviation[eoObsNR], prdev[eoObsNR], epot0, dist, rmsf; in do_coupling() local
|