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Searched refs:rootlength (Results 1 – 3 of 3) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dindexdb.c445 int rootlength, patternlength; in Indexdb_get_filenames_no_compression() local
620 rootlength = q - base_filename; in Indexdb_get_filenames_no_compression()
632 strncpy(positions_high_basename_ptr,base_filename,rootlength); in Indexdb_get_filenames_no_compression()
636 strncpy(positions_basename_ptr,base_filename,rootlength); in Indexdb_get_filenames_no_compression()
726 int rootlength, patternlength; in Indexdb_get_filenames_bitpack() local
1013 rootlength = q - base_filename; in Indexdb_get_filenames_bitpack()
1021 strncpy(offsetsmeta_basename_ptr,base_filename,rootlength); in Indexdb_get_filenames_bitpack()
1045 strncpy(offsetspages_basename_ptr,base_filename,rootlength); in Indexdb_get_filenames_bitpack()
1066 strncpy(positions_basename_ptr,base_filename,rootlength); in Indexdb_get_filenames_bitpack()
1075 …strncpy(&(positions_high_basename_ptr[rootlength-BASE_KMER_SAMPLING]),&(base_filename[rootlength-B… in Indexdb_get_filenames_bitpack()
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/dports/biology/fluctuate/fluctuate1.4/
H A Dnu_constants.h33 #define rootlength 10000 /* length of root branch must be much macro
H A Dfluctuate.c244 if (t->age >= curtree->root->tyme) return(rootlength); in howlong()
1481 p->back->tyme = rootlength; in orient()
1532 t->age = t->eventnode->tyme + rootlength; in initbranchlist()
1960 p->next->next->length = rootlength; in treeread()
2045 p->length = rootlength; in constructtree()
2046 q->length = rootlength; in constructtree()
2050 p->tyme = rootlength + height; in constructtree()