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Searched refs:rsq_size (Results 1 – 3 of 3) sorted by relevance

/dports/biology/gcta/gcta_1.26.0_src/
H A Dld.cpp407 rsq_size[j] = 0.0; in calcu_ld_blk()
420 rsq_size[j] += 1.0; in calcu_ld_blk()
424 if (rsq_size[j] > 0.0) mean_rsq_sub[j] /= rsq_size[j]; in calcu_ld_blk()
430 if (rsq_size[j] > 0.0) { in calcu_ld_blk()
431 …an_rsq[k] = (mean_rsq[k] * snp_num[k] + mean_rsq_sub[j] * rsq_size[j]) / (snp_num[k] + rsq_size[j]… in calcu_ld_blk()
438 snp_num[k] = rsq_size[j]; in calcu_ld_blk()
494 rsq_size[k] = rsq_size_sub[j]; in calcu_ld_blk_split()
646 rsq_size[j] = 0.0; in calcu_ld_blk_multiSet()
664 if (rsq_size[j] > 0.0) mean_rsq_sub[j] /= rsq_size[j]; in calcu_ld_blk_multiSet()
669 if (rsq_size[j] > 0.0) { in calcu_ld_blk_multiSet()
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H A Dmkl.cpp630 vector<double> rsq_size(size), mean_rsq_sub(size), max_rsq_sub(size); in calcu_ld_blk_mkl() local
633 …t) calcu_ld_blk_split_mkl(size, size_limit, X_sub, ssx_sub, rsq_cutoff, rsq_size, mean_rsq_sub, ma… in calcu_ld_blk_mkl()
639 rsq_size[j] = 0.0; in calcu_ld_blk_mkl()
653 rsq_size[j] += 1.0; in calcu_ld_blk_mkl()
657 if (rsq_size[j] > 0.0) mean_rsq_sub[j] /= rsq_size[j]; in calcu_ld_blk_mkl()
665 if (rsq_size[j] > 0.0) { in calcu_ld_blk_mkl()
666 …an_rsq[k] = (mean_rsq[k] * snp_num[k] + mean_rsq_sub[j] * rsq_size[j]) / (snp_num[k] + rsq_size[j]… in calcu_ld_blk_mkl()
667 snp_num[k] = (snp_num[k] + rsq_size[j]); in calcu_ld_blk_mkl()
673 snp_num[k] = rsq_size[j]; in calcu_ld_blk_mkl()
680 …oat *X_sub, vector<double> &ssx_sub, double rsq_cutoff, vector<double> &rsq_size, vector<double> &… in calcu_ld_blk_split_mkl() argument
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H A Dgcta.h293 …Xf &X_sub, eigenVector &ssx_sqrt_i_sub, double rsq_cutoff, eigenVector &rsq_size, eigenVector &mea…
298 …_this_set, eigenVector &ssx_sqrt_i_sub, double rsq_cutoff, eigenVector &rsq_size, eigenVector &mea…
339 …oat *X_sub, vector<double> &ssx_sub, double rsq_cutoff, vector<double> &rsq_size, vector<double> &…