Searched refs:rsq_size (Results 1 – 3 of 3) sorted by relevance
/dports/biology/gcta/gcta_1.26.0_src/ |
H A D | ld.cpp | 407 rsq_size[j] = 0.0; in calcu_ld_blk() 420 rsq_size[j] += 1.0; in calcu_ld_blk() 424 if (rsq_size[j] > 0.0) mean_rsq_sub[j] /= rsq_size[j]; in calcu_ld_blk() 430 if (rsq_size[j] > 0.0) { in calcu_ld_blk() 431 …an_rsq[k] = (mean_rsq[k] * snp_num[k] + mean_rsq_sub[j] * rsq_size[j]) / (snp_num[k] + rsq_size[j]… in calcu_ld_blk() 438 snp_num[k] = rsq_size[j]; in calcu_ld_blk() 494 rsq_size[k] = rsq_size_sub[j]; in calcu_ld_blk_split() 646 rsq_size[j] = 0.0; in calcu_ld_blk_multiSet() 664 if (rsq_size[j] > 0.0) mean_rsq_sub[j] /= rsq_size[j]; in calcu_ld_blk_multiSet() 669 if (rsq_size[j] > 0.0) { in calcu_ld_blk_multiSet() [all …]
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H A D | mkl.cpp | 630 vector<double> rsq_size(size), mean_rsq_sub(size), max_rsq_sub(size); in calcu_ld_blk_mkl() local 633 …t) calcu_ld_blk_split_mkl(size, size_limit, X_sub, ssx_sub, rsq_cutoff, rsq_size, mean_rsq_sub, ma… in calcu_ld_blk_mkl() 639 rsq_size[j] = 0.0; in calcu_ld_blk_mkl() 653 rsq_size[j] += 1.0; in calcu_ld_blk_mkl() 657 if (rsq_size[j] > 0.0) mean_rsq_sub[j] /= rsq_size[j]; in calcu_ld_blk_mkl() 665 if (rsq_size[j] > 0.0) { in calcu_ld_blk_mkl() 666 …an_rsq[k] = (mean_rsq[k] * snp_num[k] + mean_rsq_sub[j] * rsq_size[j]) / (snp_num[k] + rsq_size[j]… in calcu_ld_blk_mkl() 667 snp_num[k] = (snp_num[k] + rsq_size[j]); in calcu_ld_blk_mkl() 673 snp_num[k] = rsq_size[j]; in calcu_ld_blk_mkl() 680 …oat *X_sub, vector<double> &ssx_sub, double rsq_cutoff, vector<double> &rsq_size, vector<double> &… in calcu_ld_blk_split_mkl() argument [all …]
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H A D | gcta.h | 293 …Xf &X_sub, eigenVector &ssx_sqrt_i_sub, double rsq_cutoff, eigenVector &rsq_size, eigenVector &mea… 298 …_this_set, eigenVector &ssx_sqrt_i_sub, double rsq_cutoff, eigenVector &rsq_size, eigenVector &mea… 339 …oat *X_sub, vector<double> &ssx_sub, double rsq_cutoff, vector<double> &rsq_size, vector<double> &…
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