| /dports/biology/samtools/samtools-1.14/misc/ |
| H A D | zoom2sam.pl | 65 my ($s_last, $s_curr) = (\@s1, \@s2);
68 if (@$s_last != 0 && $s_last->[0] eq $s_curr->[0]) {
69 &mating($s_last, $s_curr);
70 print join("\t", @$s_last), "\n";
72 @$s_last = (); @$s_curr = ();
74 print join("\t", @$s_last), "\n" if (@$s_last != 0);
75 my $s = $s_last; $s_last = $s_curr; $s_curr = $s;
78 print join("\t", @$s_last), "\n" if (@$s_last != 0);
|
| H A D | soap2sam.pl | 63 my ($s_last, $s_curr) = (\@s1, \@s2);
67 if (@$s_last != 0 && $s_last->[0] eq $s_curr->[0]) {
68 &mating($s_last, $s_curr);
69 print join("\t", @$s_last), "\n";
71 @$s_last = (); @$s_curr = ();
73 print join("\t", @$s_last), "\n" if (@$s_last != 0);
74 my $s = $s_last; $s_last = $s_curr; $s_curr = $s;
77 print join("\t", @$s_last), "\n" if (@$s_last != 0);
|
| H A D | novo2sam.pl | 70 my ($s_last, $s_curr) = (\@s1, \@s2);
75 if (@$s_last != 0 && $s_last->[0] eq $s_curr->[0]) {
76 &mating($s_last, $s_curr);
77 print join("\t", @$s_last), "\n";
79 @$s_last = (); @$s_curr = ();
81 print join("\t", @$s_last), "\n" if (@$s_last != 0);
82 my $s = $s_last; $s_last = $s_curr; $s_curr = $s;
85 print join("\t", @$s_last), "\n" if (@$s_last != 0);
|
| /dports/biology/seqan1/seqan-1.3.1/lib/samtools/misc/ |
| H A D | zoom2sam.pl | 46 my ($s_last, $s_curr) = (\@s1, \@s2);
49 if (@$s_last != 0 && $s_last->[0] eq $s_curr->[0]) {
50 &mating($s_last, $s_curr);
51 print join("\t", @$s_last), "\n";
53 @$s_last = (); @$s_curr = ();
55 print join("\t", @$s_last), "\n" if (@$s_last != 0);
56 my $s = $s_last; $s_last = $s_curr; $s_curr = $s;
59 print join("\t", @$s_last), "\n" if (@$s_last != 0);
|
| H A D | soap2sam.pl | 44 my ($s_last, $s_curr) = (\@s1, \@s2);
48 if (@$s_last != 0 && $s_last->[0] eq $s_curr->[0]) {
49 &mating($s_last, $s_curr);
50 print join("\t", @$s_last), "\n";
52 @$s_last = (); @$s_curr = ();
54 print join("\t", @$s_last), "\n" if (@$s_last != 0);
55 my $s = $s_last; $s_last = $s_curr; $s_curr = $s;
58 print join("\t", @$s_last), "\n" if (@$s_last != 0);
|
| H A D | novo2sam.pl | 47 my ($s_last, $s_curr) = (\@s1, \@s2);
52 if (@$s_last != 0 && $s_last->[0] eq $s_curr->[0]) {
53 &mating($s_last, $s_curr);
54 print join("\t", @$s_last), "\n";
56 @$s_last = (); @$s_curr = ();
58 print join("\t", @$s_last), "\n" if (@$s_last != 0);
59 my $s = $s_last; $s_last = $s_curr; $s_curr = $s;
62 print join("\t", @$s_last), "\n" if (@$s_last != 0);
|
| /dports/emulators/qemu-utils/qemu-4.2.1/roms/u-boot-sam460ex/common/ |
| H A D | cmd_flash.c | 208 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
251 s_last[bank] = sect; in flash_fill_sect_ranges()
255 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
257 s_last[bank] = s_end; in flash_fill_sect_ranges()
265 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
271 sect = s_last[bank]; in flash_fill_sect_ranges()
278 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
436 s_first, s_last, &planned ); in flash_sect_erase()
447 (s_last[bank] == info->sector_count) ? in flash_sect_erase()
449 info->start[s_last[bank]+1] - 1, in flash_sect_erase()
[all …]
|
| /dports/emulators/qemu5/qemu-5.2.0/roms/u-boot-sam460ex/common/ |
| H A D | cmd_flash.c | 208 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
251 s_last[bank] = sect; in flash_fill_sect_ranges()
255 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
257 s_last[bank] = s_end; in flash_fill_sect_ranges()
265 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
271 sect = s_last[bank]; in flash_fill_sect_ranges()
278 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
436 s_first, s_last, &planned ); in flash_sect_erase()
447 (s_last[bank] == info->sector_count) ? in flash_sect_erase()
449 info->start[s_last[bank]+1] - 1, in flash_sect_erase()
[all …]
|
| /dports/emulators/qemu-guest-agent/qemu-5.0.1/roms/u-boot-sam460ex/common/ |
| H A D | cmd_flash.c | 208 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
251 s_last[bank] = sect; in flash_fill_sect_ranges()
255 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
257 s_last[bank] = s_end; in flash_fill_sect_ranges()
265 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
271 sect = s_last[bank]; in flash_fill_sect_ranges()
278 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
436 s_first, s_last, &planned ); in flash_sect_erase()
447 (s_last[bank] == info->sector_count) ? in flash_sect_erase()
449 info->start[s_last[bank]+1] - 1, in flash_sect_erase()
[all …]
|
| /dports/emulators/qemu-powernv/qemu-powernv-3.0.50/roms/u-boot-sam460ex/common/ |
| H A D | cmd_flash.c | 208 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
251 s_last[bank] = sect; in flash_fill_sect_ranges()
255 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
257 s_last[bank] = s_end; in flash_fill_sect_ranges()
265 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
271 sect = s_last[bank]; in flash_fill_sect_ranges()
278 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
436 s_first, s_last, &planned ); in flash_sect_erase()
447 (s_last[bank] == info->sector_count) ? in flash_sect_erase()
449 info->start[s_last[bank]+1] - 1, in flash_sect_erase()
[all …]
|
| /dports/emulators/qemu42/qemu-4.2.1/roms/u-boot-sam460ex/common/ |
| H A D | cmd_flash.c | 208 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
251 s_last[bank] = sect; in flash_fill_sect_ranges()
255 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
257 s_last[bank] = s_end; in flash_fill_sect_ranges()
265 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
271 sect = s_last[bank]; in flash_fill_sect_ranges()
278 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
436 s_first, s_last, &planned ); in flash_sect_erase()
447 (s_last[bank] == info->sector_count) ? in flash_sect_erase()
449 info->start[s_last[bank]+1] - 1, in flash_sect_erase()
[all …]
|
| /dports/emulators/qemu/qemu-6.2.0/roms/u-boot-sam460ex/common/ |
| H A D | cmd_flash.c | 208 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
251 s_last[bank] = sect; in flash_fill_sect_ranges()
255 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
257 s_last[bank] = s_end; in flash_fill_sect_ranges()
265 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
271 sect = s_last[bank]; in flash_fill_sect_ranges()
278 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
436 s_first, s_last, &planned ); in flash_sect_erase()
447 (s_last[bank] == info->sector_count) ? in flash_sect_erase()
449 info->start[s_last[bank]+1] - 1, in flash_sect_erase()
[all …]
|
| /dports/emulators/qemu60/qemu-6.0.0/roms/u-boot-sam460ex/common/ |
| H A D | cmd_flash.c | 208 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
251 s_last[bank] = sect; in flash_fill_sect_ranges()
255 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
257 s_last[bank] = s_end; in flash_fill_sect_ranges()
265 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
271 sect = s_last[bank]; in flash_fill_sect_ranges()
278 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
436 s_first, s_last, &planned ); in flash_sect_erase()
447 (s_last[bank] == info->sector_count) ? in flash_sect_erase()
449 info->start[s_last[bank]+1] - 1, in flash_sect_erase()
[all …]
|
| /dports/emulators/qemu5/qemu-5.2.0/roms/u-boot/cmd/ |
| H A D | flash.c | 189 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
232 s_last[bank] = sect; in flash_fill_sect_ranges()
236 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
238 s_last[bank] = s_end; in flash_fill_sect_ranges()
246 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
252 sect = s_last[bank]; in flash_fill_sect_ranges()
259 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
403 s_first, s_last, &planned ); in flash_sect_erase()
414 (s_last[bank] == info->sector_count) ? in flash_sect_erase()
416 info->start[s_last[bank]+1] - 1, in flash_sect_erase()
[all …]
|
| /dports/sysutils/u-boot-olinuxino-lime/u-boot-2021.07/cmd/ |
| H A D | flash.c | 191 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
234 s_last[bank] = sect; in flash_fill_sect_ranges()
238 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
240 s_last[bank] = s_end; in flash_fill_sect_ranges()
248 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
254 sect = s_last[bank]; in flash_fill_sect_ranges()
261 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
407 s_first, s_last, &planned ); in flash_sect_erase()
419 info->start[s_last[bank] + 1] - 1, in flash_sect_erase()
422 s_last[bank]); in flash_sect_erase()
[all …]
|
| /dports/sysutils/u-boot-olinuxino-lime2-emmc/u-boot-2021.07/cmd/ |
| H A D | flash.c | 191 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
234 s_last[bank] = sect; in flash_fill_sect_ranges()
238 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
240 s_last[bank] = s_end; in flash_fill_sect_ranges()
248 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
254 sect = s_last[bank]; in flash_fill_sect_ranges()
261 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
407 s_first, s_last, &planned ); in flash_sect_erase()
419 info->start[s_last[bank] + 1] - 1, in flash_sect_erase()
422 s_last[bank]); in flash_sect_erase()
[all …]
|
| /dports/sysutils/u-boot-olinuxino-lime2/u-boot-2021.07/cmd/ |
| H A D | flash.c | 191 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
234 s_last[bank] = sect; in flash_fill_sect_ranges()
238 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
240 s_last[bank] = s_end; in flash_fill_sect_ranges()
248 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
254 sect = s_last[bank]; in flash_fill_sect_ranges()
261 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
407 s_first, s_last, &planned ); in flash_sect_erase()
419 info->start[s_last[bank] + 1] - 1, in flash_sect_erase()
422 s_last[bank]); in flash_sect_erase()
[all …]
|
| /dports/emulators/qemu-guest-agent/qemu-5.0.1/roms/u-boot/cmd/ |
| H A D | flash.c | 189 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
232 s_last[bank] = sect; in flash_fill_sect_ranges()
236 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
238 s_last[bank] = s_end; in flash_fill_sect_ranges()
246 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
252 sect = s_last[bank]; in flash_fill_sect_ranges()
259 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
403 s_first, s_last, &planned ); in flash_sect_erase()
414 (s_last[bank] == info->sector_count) ? in flash_sect_erase()
416 info->start[s_last[bank]+1] - 1, in flash_sect_erase()
[all …]
|
| /dports/sysutils/u-boot-cubox-hummingboard/u-boot-2021.07/cmd/ |
| H A D | flash.c | 191 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
234 s_last[bank] = sect; in flash_fill_sect_ranges()
238 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
240 s_last[bank] = s_end; in flash_fill_sect_ranges()
248 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
254 sect = s_last[bank]; in flash_fill_sect_ranges()
261 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
407 s_first, s_last, &planned ); in flash_sect_erase()
419 info->start[s_last[bank] + 1] - 1, in flash_sect_erase()
422 s_last[bank]); in flash_sect_erase()
[all …]
|
| /dports/sysutils/u-boot-cubieboard2/u-boot-2021.07/cmd/ |
| H A D | flash.c | 191 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
234 s_last[bank] = sect; in flash_fill_sect_ranges()
238 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
240 s_last[bank] = s_end; in flash_fill_sect_ranges()
248 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
254 sect = s_last[bank]; in flash_fill_sect_ranges()
261 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
407 s_first, s_last, &planned ); in flash_sect_erase()
419 info->start[s_last[bank] + 1] - 1, in flash_sect_erase()
422 s_last[bank]); in flash_sect_erase()
[all …]
|
| /dports/sysutils/u-boot-cubieboard/u-boot-2021.07/cmd/ |
| H A D | flash.c | 191 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
234 s_last[bank] = sect; in flash_fill_sect_ranges()
238 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
240 s_last[bank] = s_end; in flash_fill_sect_ranges()
248 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
254 sect = s_last[bank]; in flash_fill_sect_ranges()
261 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
407 s_first, s_last, &planned ); in flash_sect_erase()
419 info->start[s_last[bank] + 1] - 1, in flash_sect_erase()
422 s_last[bank]); in flash_sect_erase()
[all …]
|
| /dports/sysutils/u-boot-firefly-rk3399/u-boot-2021.07/cmd/ |
| H A D | flash.c | 191 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
234 s_last[bank] = sect; in flash_fill_sect_ranges()
238 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
240 s_last[bank] = s_end; in flash_fill_sect_ranges()
248 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
254 sect = s_last[bank]; in flash_fill_sect_ranges()
261 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
407 s_first, s_last, &planned ); in flash_sect_erase()
419 info->start[s_last[bank] + 1] - 1, in flash_sect_erase()
422 s_last[bank]); in flash_sect_erase()
[all …]
|
| /dports/sysutils/u-boot-sinovoip-bpi-m3/u-boot-2021.07/cmd/ |
| H A D | flash.c | 191 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
234 s_last[bank] = sect; in flash_fill_sect_ranges()
238 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
240 s_last[bank] = s_end; in flash_fill_sect_ranges()
248 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
254 sect = s_last[bank]; in flash_fill_sect_ranges()
261 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
407 s_first, s_last, &planned ); in flash_sect_erase()
419 info->start[s_last[bank] + 1] - 1, in flash_sect_erase()
422 s_last[bank]); in flash_sect_erase()
[all …]
|
| /dports/sysutils/u-boot-a13-olinuxino/u-boot-2021.07/cmd/ |
| H A D | flash.c | 191 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
234 s_last[bank] = sect; in flash_fill_sect_ranges()
238 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
240 s_last[bank] = s_end; in flash_fill_sect_ranges()
248 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
254 sect = s_last[bank]; in flash_fill_sect_ranges()
261 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
407 s_first, s_last, &planned ); in flash_sect_erase()
419 info->start[s_last[bank] + 1] - 1, in flash_sect_erase()
422 s_last[bank]); in flash_sect_erase()
[all …]
|
| /dports/sysutils/u-boot-sopine/u-boot-2021.07/cmd/ |
| H A D | flash.c | 191 int *s_first, int *s_last, in flash_fill_sect_ranges() argument
234 s_last[bank] = sect; in flash_fill_sect_ranges()
238 if (s_last[bank] < 0) { in flash_fill_sect_ranges()
240 s_last[bank] = s_end; in flash_fill_sect_ranges()
248 if (s_last[bank] < s_first[bank]) { in flash_fill_sect_ranges()
254 sect = s_last[bank]; in flash_fill_sect_ranges()
261 } else if (s_last[bank] >= 0) { in flash_fill_sect_ranges()
407 s_first, s_last, &planned ); in flash_sect_erase()
419 info->start[s_last[bank] + 1] - 1, in flash_sect_erase()
422 s_last[bank]); in flash_sect_erase()
[all …]
|