| /dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/ |
| H A D | cram_io.h | 147 static inline int safe_ltf8_get(const char *cp, const char *endp, in safe_ltf8_get() function
343 #define safe_ltf8_get uint7_get macro
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| H A D | cram_decode.c | 164 cp += safe_ltf8_get(cp, endp, &i64); hdr->ref_seq_start=i64; in cram_decode_compression_header()
165 cp += safe_ltf8_get(cp, endp, &i64); hdr->ref_seq_span=i64; in cram_decode_compression_header()
1065 cp += safe_ltf8_get((char *)cp, (char *)cp_end, &i64); in cram_decode_slice_header()
1067 cp += safe_ltf8_get((char *)cp, (char *)cp_end, &i64); in cram_decode_slice_header()
1083 cp += safe_ltf8_get((char *)cp, (char *)cp_end, &hdr->record_counter); in cram_decode_slice_header()
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| H A D | cram_codecs.c | 362 l = safe_ltf8_get(cp, (char *)b->data + b->uncomp_size, (int64_t *)out); in cram_external_decode_long()
1107 l = safe_ltf8_get(cp, data_end, &codes[i].symbol); in cram_huffman_decode_init()
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/ |
| H A D | cram_io.h | 301 static inline int safe_ltf8_get(const char *cp, const char *endp, in safe_ltf8_get() function
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| H A D | cram_decode.c | 1107 cp += safe_ltf8_get((char *)cp, (char *)cp_end, &hdr->record_counter); in cram_decode_slice_header()
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| /dports/biology/vt/vt-0.57721/lib/htslib/cram/ |
| H A D | cram_io.h | 301 static inline int safe_ltf8_get(const char *cp, const char *endp, in safe_ltf8_get() function
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| H A D | cram_decode.c | 1107 cp += safe_ltf8_get((char *)cp, (char *)cp_end, &hdr->record_counter); in cram_decode_slice_header()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/ |
| H A D | cram_io.h | 301 static inline int safe_ltf8_get(const char *cp, const char *endp, in safe_ltf8_get() function
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| H A D | cram_decode.c | 1107 cp += safe_ltf8_get((char *)cp, (char *)cp_end, &hdr->record_counter); in cram_decode_slice_header()
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| /dports/biology/stacks/stacks-2.4/htslib/cram/ |
| H A D | cram_io.h | 301 static inline int safe_ltf8_get(const char *cp, const char *endp, in safe_ltf8_get() function
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| H A D | cram_decode.c | 1107 cp += safe_ltf8_get((char *)cp, (char *)cp_end, &hdr->record_counter); in cram_decode_slice_header()
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/cram/ |
| H A D | cram_decode.c | 176 cp += safe_ltf8_get(cp, endp, &hdr->ref_seq_start); in cram_decode_compression_header()
177 cp += safe_ltf8_get(cp, endp, &hdr->ref_seq_span); in cram_decode_compression_header()
981 cp += safe_ltf8_get((char *)cp, (char *)cp_end, &hdr->ref_seq_start); in cram_decode_slice_header()
982 cp += safe_ltf8_get((char *)cp, (char *)cp_end, &hdr->ref_seq_span); in cram_decode_slice_header()
1004 cp += safe_ltf8_get((char *)cp, (char *)cp_end, &hdr->record_counter); in cram_decode_slice_header()
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| H A D | cram_io.h | 302 static inline int safe_ltf8_get(const char *cp, const char *endp, in safe_ltf8_get() function
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| H A D | cram_codecs.c | 348 l = safe_ltf8_get(cp, (char *)b->data + b->uncomp_size, (int64_t *)out); in cram_external_decode_long()
1133 l = safe_ltf8_get(cp, data_end, &codes[i].symbol); in cram_huffman_decode_init()
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/cram/ |
| H A D | cram_io.c | 668 static int64_t safe_ltf8_get(char **cp, const char *endp, int *err) { in safe_ltf8_get() function
5028 vv->varint_get64 = safe_ltf8_get; in cram_init_varint()
5029 vv->varint_get64s = safe_ltf8_get; in cram_init_varint()
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| /dports/biology/htslib/htslib-1.14/cram/ |
| H A D | cram_io.c | 668 static int64_t safe_ltf8_get(char **cp, const char *endp, int *err) { in safe_ltf8_get() function
5028 vv->varint_get64 = safe_ltf8_get; in cram_init_varint()
5029 vv->varint_get64s = safe_ltf8_get; in cram_init_varint()
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