Searched refs:samRecordComparator (Results 1 – 2 of 2) sorted by relevance
48 final SAMRecordComparator samRecordComparator; in getSamRecordComparator() local51 samRecordComparator = new SAMRecordCoordinateComparator(); in getSamRecordComparator()54 samRecordComparator = new SAMRecordQueryNameComparator(); in getSamRecordComparator()59 return samRecordComparator; in getSamRecordComparator()
329 …final SAMRecordComparator samRecordComparator = SVUtils.getSamRecordComparator(assemblyAlnSortOrde… in writeAssemblySAMFile() local335 .sorted(samRecordComparator); in writeAssemblySAMFile()